Query= MSMg01no197_a22.b1 MSMg01no197_a22.b1 CHROMAT_FILE:
MSMg01no197_a22.b1 PHD_FILE: MSMg01no197_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:48 2005
(645 letters)
>mm_chr14_106907336_106908381
Length = 1046
Score = 1054 bits (545), Expect = 0.0
Identities = 554/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcaactttatctctggcaacaaaaccctgactgtaaaacacagaaacatttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggaattcagcaactttatctctggcaacaaaaccctgactgtaaaacacagaaacatttt 498
Query: 64 acagtcttgagaaaagccaccatctcaggttaaaatatcgtcctggccacccacaggagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acagtcttgagaaaagccaccatctcaggttaaaatatcgtcctggccacccacaggagt 438
Query: 124 ttatcagttcatgagaaatctc-taagtcctgatctgcagtgctatttgttctaaaatgc 182
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttatcagttcatgagaaatctcttaagtcctgatctgcagtgctatttgttctaaaatgc 378
Query: 183 ttgtttagttggcgttgtatctgcattagcatattcttgatttctttggacatgaaaaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgtttagttggcgttgtatctgcattagcatattcttgatttctttggacatgaaaaac 318
Query: 243 gtggcataagctacagtatgtctctcaaaataatcattaaatccaactatgactagggaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtggcataagctacagtatgtctctcaaaataatcattaaatccaactatgactagggaa 258
Query: 303 aaacagcaaaaaatggtatgtgtcataaatgccatataactgtaattttcccacgagcac 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaacagcaaaaaatggtatgggtcataaatgccatataactgtaattttcccacgagcac 198
Query: 363 tgactgttcatcccgagcacacacgtttgattcccagaaccaatatggcctcccccataa 422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgactgttcatcctgagcacacacgtttgattcccagaaccaatatggcctcccccataa 138
Query: 423 ctccagttccagggcatgaacttgatctacaaatatacatgcaagcataacgtcatacat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctccagttccagggcatgaacttgatctacaaatatacatgcaagcataacgtcatacat 78
Query: 483 gtaaaacaaagtcttttaaaaattaaatggcaaatgagttaatggtaaactgatttttgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gtaaaacaaagtcttttaaaaattaaatggcaaatgagttaatggtaaactgatttttgt 18
Query: 543 taactcttttgacaata 559
|||||||||||||||||
Sbjct: 17 taactcttttgacaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_a22.g1 MSMg01no197_a22.g1 CHROMAT_FILE:
MSMg01no197_a22.g1 PHD_FILE: MSMg01no197_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:48 2005
(563 letters)
>mm_chr14_106883266_106884235
Length = 970
Score = 1025 bits (530), Expect = 0.0
Identities = 558/570 (97%), Gaps = 7/570 (1%)
Strand = Plus / Plus
Query: 1 caaaggattcagtttttttt--ta-tatttgaatatgccgcacatactctcatccagttg 57
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggattcagttttttttcataatatttgaatatgccgcacatactctcatccagttg 260
Query: 58 agatgagccaataatggtggcattatttcctgatagttttgcacaatggcactccatctt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgagccaataatggtggcattatttcctgatagttttgcacaatggcactccatctt 320
Query: 118 tgatgatgatgttgaagttgactgtgtgttctgtcagtgcctcagaacagtgtatccatt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatgatgatgttgaagttgactgtgtgttctgtcagtgcctcagaacagtgtatccatt 380
Query: 178 atcccgccaaacacaggagaacgagaaccaggaaacactgccatttagctgttacacagg 237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcccgccaaacacaggagaaagagaaccaggaaacactgccatttagctgttacacagg 440
Query: 238 tgtcagccaggacaaggcatcactcatctgagagggccattacaaagaatatattgtctt 297
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 441 tgtcagccaggacaaggcatcactcatctgagagggccattacaaagaaaacattgtctt 500
Query: 298 tgttctaaaatcaccaaagcatggcaaactctatttgtcaaatacccctcatcccggtga 357
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgttctaaaatcaccaaagcatggcaaactctatttgtcaaatagtcctcatcccggtga 560
Query: 358 ttcctcaaaagagataatttaaagcctttgtagctttaaaaatactgtattttgtgcaca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcctcaaaagagataatttaaagcctttgtagctttaaaaatactgtattttgtgcaca 620
Query: 418 ggaactctgtttcttgagactgtggaatttgaaaactgaaacacctagtcag----tctt 473
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 ggaactctgtttcttgagactgtggaatttgaaaactgaaacacctagtcagacagtctt 680
Query: 474 aggcagcatttctggtagcttttctgatactaggtcatcctgagagtcttggttatatgc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcagcatttctggtagcttttctgatactaggtcatcctgagagtcttggttatatgc 740
Query: 534 ttcttgtcccaactttactttccttgctta 563
||||||||||||||||||||||||||||||
Sbjct: 741 ttcttgtcccaactttactttccttgctta 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 970
Length adjustment: 10
Effective length of query: 553
Effective length of database: 960
Effective search space: 530880
Effective search space used: 530880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
