BAC Information

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BAC

Clone NameMSMg01-199B03
Chromosome14 (Build37)
Map Location 83,464,341 - 83,595,240
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199B03.T7 (MSMg01no199_b03.b1)MSMg01-199B03.TJ (MSMg01no199_b03.g1)
ACCAG386145AG386146
length857797
length of high quality
(start - end)		313 (102 - 414)229 (89 - 317)
definitionCHROMAT_FILE: MSMg01no199_b03.b1 PHD_FILE: MSMg01no199_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:30 2005CHROMAT_FILE: MSMg01no199_b03.g1 PHD_FILE: MSMg01no199_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,594,931 - 83,595,240)(83,464,341 - 83,464,569)
sequence
TTTTAGGAGTCTCCCTTCTTCCTCTTCCTCCCCTTNCCNCTCCCNTCCCC
CNNNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGGGAGACAGACCAGTAAGCACTTACACTACTAATCTAT
CACTCCAACCTTATTCTGTAAATACTTATTCATCCTACTCTTTACCAAAG
ATTGTAACTGAGTAATAACAGTGTAATTAAAACATTAATTTTGTTGATAG
TGAATGAAATTAATACAGTACACTTAAGGATATGCTGCCTGGAAATATTT
TCAGAACAAATTAACTAGATGGGAGGAGGAGAGTGCCTGAATGGACATAA
TGCAGCATGGTTAATCAAATTTTATTGTATATACTTATAATAGTACACTG
AAGAGTTTCTTATATGATGATGGATAAATTAAAGATAGTTTATATCACTG
CAAAGCTTCCCGTGAGCATGTATCCCCCCCCGGTTATAAATATATTGTTT
ATAAAATGTTTAGCCTCCAATTCATTTATTTTCTTCCTAACCTAATCATT
TTAATATATTGCAACAATATAGAATATAATTCAACCCTACTAGGGCATAG
AATTCCTTTTTTCTATACTTCATTTTACTTCCCTCACTTTTTTCTCCTGT
TTTTTTTCGCATATTTTTTCTCCCTCCTCCACTTACCTTTACCATATATT
CTTTTCTTTATTATTATTTATGCTATTCATAATAATTTTTTTTTTTATTC
TCTTCTAATATTTAATTTACTTAAACTCTTCTACTAATAATTGTCGTCGC
TGTTTTTTTAATTAACTTATTTTCTTAACATATTTATTCTACACTAATTT
CTAATTG

CCCCTCCCNTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGTTCAGGA
GTGGGTGGGTAATGCTACCCCTGTCAAAGCAAAGGTGACTAGAAAAGGAA
GCTGTGTTGGGACTGCTTGGCACCAATCTGTCAGCAACGCCAGGAGAAAC
AAAAGGGAGCTGGGAGGAGTTGGAGCACAAGTATCAGATCTTGGGCAAAG
GCAGTGTATGTTCTTAAAACTACATGAACAGTATCCCTGTGGCTGAATTA
GGGGCAGAATTGAAGAATCTGAAGGTCTTGAGATCCTGTATTATGACCAG
TAATCTCATCTAACCCAGGTCAAAGGGAGCTGCCAGATATTGAACCACCA
GCCTGGAGCATACATATATTGTTTTTTACCCCCCCCTTGTCCCCTAAATA
ATCCACTTTTGATGTCCCTGCCCTCCACTCTATTATTTTGTTCTTCCCTT
GCACATACCTTTCTCTTCCATTTTTCTTTCCCTTTCCCCCCCCTTCTTTT
TTTTTTCCTTTTCCCTCCCTTTTTTTCCCACCCCAATTTCATTTTTTATC
TCACCCTCTCTCTTTTTTCCCCCCCTCTTTTTCCCCCTTTCTCCCCCTTT
TTTTTCTCCTCTCTCCCTTCTTTTCCCCCTTTCTTTCCCCCTTTTTACTT
TTTCACCCTTTTCTCTATATCCACCCCTATTTACACCCTCCCCCTCTTTC
CCTACATTTTTTCCCACCTTTCTTTTTCTCTTATCTATTTATTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_b03.b1 MSMg01no199_b03.b1 CHROMAT_FILE:
MSMg01no199_b03.b1 PHD_FILE: MSMg01no199_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:30 2005
         (313 letters)



>mm_chr14_83594728_83595440
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgggagacagaccagtaagcacttacactactaatctatcactccaaccttat 63
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 513 ggaattctgggagacagatcagtaagcacttatactactaatctatcactccaaccttat 454

                                                                       
Query: 64  tctgtaaatacttattcatcctactctttaccaaagattgtaactgagtaataacagtgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctgtaaatacttattcatcctactctttaccaaagattgtaactgagtaataacagtgt 394

                                                                       
Query: 124 aattaaaacattaattttgttgatagtgaatgaaattaatacagtacacttaaggatatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aattaaaacattaattttgttgatagtgaatgaaattaatacagtacacttaaggatatg 334

                                                                       
Query: 184 ctgcctggaaatattttcagaacaaattaactagatgggaggaggagagtgcctgaatgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgcctggaaatattttcagaacaaattaactagatgggaggaggagagtgcctgaatgg 274

                                                                       
Query: 244 acataatgcagcatggttaatcaaattttattgtatatacttataatagtacactgaaga 303
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 273 acataatgcagcatggttaatcaaagtttattgtataaacttataatagtacactgaaga 214

                     
Query: 304 gtttcttata 313
           ||||||||||
Sbjct: 213 gtttcttata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no199_b03.g1 MSMg01no199_b03.g1 CHROMAT_FILE:
MSMg01no199_b03.g1 PHD_FILE: MSMg01no199_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:30 2005
         (229 letters)



>mm_chr14_83464141_83464769
          Length = 629

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgttcaggagtgggtgggtaatgctacccctgtcaaagcaaaggtgactagaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtgttcaggagtgggtgggtaatgctacccctgtcaaagcaaaggtgactagaaaagg 260

                                                                       
Query: 61  aagctgtgttgggactgcttggcaccaatctgtcagcaacgccaggagaaacaaaaggga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgtgttggggctgcttggcaccaatctgtcagcaacgccaggagaaacaaaaggga 320

                                                                       
Query: 121 gctgggaggagttggagcacaagtatcagatcttgggcaaaggcagtgtatgttcttaaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgggaggggttggagcacaagtatcagatcttgggcaaaggcagtgtatgttcttaaa 380

                                                            
Query: 181 actacatgaacagtatccctgtggctgaattaggggcagaattgaagaa 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actacatgaacagtatccctgtggctgaattaggggcagaattgaagaa 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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