Query= MSMg01no199_l03.b1 MSMg01no199_l03.b1 CHROMAT_FILE:
MSMg01no199_l03.b1 PHD_FILE: MSMg01no199_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:21 2005
(158 letters)
>mm_chr14_79866244_79866801
Length = 558
Score = 282 bits (146), Expect = 5e-81
Identities = 155/158 (98%)
Strand = Plus / Minus
Query: 1 tggctgtgtaatttgcaaagaggctgataccccagtacatgtatggtgttcacactaagg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 358 tggctgtgtaatttgcaaagaggctgaaaccccagtacatgtatggtgttcacactaagg 299
Query: 61 tggaaaagtaggtgaaaaggctttcttagcccggtaaagatagaatctcccccaggacat 120
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 298 tggaaaagtaggtgaaaaggctttcttagcccggtgaagagagaatctcccccaggacat 239
Query: 121 ctgtagggactgcttctggcccgaaagggagtcatcgt 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctgtagggactgcttctggcccgaaagggagtcatcgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space: 82500
Effective search space used: 82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no199_l03.g1 MSMg01no199_l03.g1 CHROMAT_FILE:
MSMg01no199_l03.g1 PHD_FILE: MSMg01no199_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:21 2005
(584 letters)
>mm_chr14_79752178_79753160
Length = 983
Score = 948 bits (490), Expect = 0.0
Identities = 550/582 (94%), Gaps = 26/582 (4%)
Strand = Plus / Plus
Query: 5 aaagtctaaaacttccctatgcttaggaggtgaaggcaagaacatgtcagtgtaaggcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaagtctaaaacttccctatgcttaggaggtgaaggcaagaacatgtcagtgtaaggcta 278
Query: 65 ccatgaacttatacagcaagagcctgtctcaaaaaaaaaaagtctaaaaatgttattatc 124
|||||| ||||||||||||||||||||| ||| |||||| |||||||
Sbjct: 279 ccatgagcttatacagcaagagcctgtc--------------tcttaaaatg-tattatc 323
Query: 125 ttcagatttaaaagaccttagctctcctttatagaactatgtatgtttccca-tttctga 183
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 324 ttcagatttaaaagaccttagctctcctttatagaactatatatatttcccattttctga 383
Query: 184 tgactctaccttcac-aaaaatgttttttcatggtaaaggtttaccataaagaactacta 242
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgactctaccttcacaaaaaat-ttttttcatggtaaaggtttaccataaagaactacta 442
Query: 243 aataaggctttgtaattctctataattctaagctgtacataaactgtaaatgtgagcatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aataaggctttgtaattctctataattctaagctgtacataaactgtaaatgtgagcatt 502
Query: 303 tcactcactcacttacaggctgatctgtttctcattctcctatgccccctgaagatacat 362
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 503 tcactcactcacttacaggctgatctgtttctcattctcctatgcccc-tgaagatacat 561
Query: 363 gctagttgtctgtttaaattgctggactgaaatttaacttacattttataaattaatttt 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 actagttgtctgtttaaattgctggactgaaatttaacttacattttataaattaatttt 621
Query: 423 tcattggttattttatttattaatttcaaatgttatcctccttcctagtttctcctccac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcattggttattttatttattaatttcaaatgttatcctccttcctagtttctcctccac 681
Query: 483 aaaccccctctcccctctcccctctcccccctccctctatgagggtgctccttcacccgt 542
||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaacccc-t------tctcccctctcccccctccctctatgagggtgctccttcacccgc 734
Query: 543 ccacccattcttgcctcagtgccctagcacttccctaccctg 584
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ccacccattcttgcctcagtgccctagcacttccctaccctg 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
