BAC Information

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BAC

Clone NameMSMg01-201N06
Chromosome14 (Build37)
Map Location 72,724,361 - 72,724,490
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043136, LOC668477
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201N06.T7 (MSMg01no201_n06.b1)MSMg01-201N06.TJ (MSMg01no201_n06.g1)
ACCAG387222AG387223
length749788
length of high quality
(start - end)
130 (127 - 256)130 (77 - 206)
definitionCHROMAT_FILE: MSMg01no201_n06.b1 PHD_FILE: MSMg01no201_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:21 2005CHROMAT_FILE: MSMg01no201_n06.g1 PHD_FILE: MSMg01no201_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTATCATGTAAATCAAATTGCCTCCCAACACCCCCATCTCCAAA
TACTCAGCATGTCAAGGGTTACCAGTTTCAATATGTAAGTGGGCACAATT
CAGCCCACAAACCAGAGTTTTCTCTCCTCTTGCACCACAAAAGCTTTTAT
ACTTTAATGTATGGCTCTTTTACGATATATTTTTATTTATTCTGTACATG
TGTAATAGTGCTTGTATGAGTTAGATGTGTGTGTGCTGTGAGXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTGTGCTTTCAGAACAATAACCTTTA
CTTATCTAGTTCTGTGTCTACTCGTTTCCCCAACCAAAAAATCTTATCAT
CCCTTGTTATATTTTTACCATGCTTCCTCCTTCGGAATTTATACATCTTT
AATTTTCCCATGTCCCATCTAACCCACCCCCCATCATGTTTTTAAGCACC
ACATTAGCATAATTACAATTCTTTTCTCCCTCCCTACTTATTTTTCTCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTGGGTAATTGTGGTCTCAG
TGTGAAATGTCCTTCATAAAACCCACATGCTTGAGCTCTAGGTTGCCGGC
TGGNNTGAGCTGCTTCAGATGGCTATGGAATTTTTANGAAATGGAATCTT
TTGANGAAGGGNNNCATTANANNCAGGCCNGGGGCTTTNATAGCTCANCT
CTACNTCCTGGTCCCTCTCTGANTCCCCCCTANANANGCNNGGGGACCAN
CNACCCCTCCCCATTCCCATCTACTACNTCCTCCCCGCCCGGNNNNAAAG
GGANNCCCCTTTAATTCTTCTNNNNCCCAAAACCCCNCTTTTTTTTTTTT
GGGGNNCCCCGCCCCCCCCAAACCAAAAAAAAAAAAAACACCCCNCGGGG
GGGGGANNNNNNNCCCNCCCCCNNNCCCNCCCNCCCCNNCCCCCCCNNCN
NNCCCCCNCNNNNCNCCNTCCCTTGCNCCCCCGCCCCCNNNNNAAAATGG
GAGGGGTGGGCGCNCCCCCCNNNNNNNNNNACCNCCCGCGNNNTATATTT
TATCCAACCCCCCTTGTACGACAACAAAAACACCAGCCCCATAANNNNGG
GCNCNNNCCNCNCCCCACAGGGCGGGGGGGGTGGGTTTGGGTGACTNNCT
CCCNNCACTCCCNCGCGGNGNCGTAGGGCGGCCNGGGGGNNCCCNNCTGC
GCGGGGGGCNCGCNCCCTGAAANCCNTNGNNAACNNNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_n06.b1 MSMg01no201_n06.b1 CHROMAT_FILE:
MSMg01no201_n06.b1 PHD_FILE: MSMg01no201_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:21 2005
         (130 letters)



>mm_chr14_72724161_72724690
          Length = 530

 Score =  228 bits (118), Expect = 8e-65
 Identities = 127/130 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaatatgtaagtgggcacaattcagcccacaaaccagagttttctctcctcttgcacc 60
           ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttcaatacgtgagtgggcacaattcagcccacaaaccagtgttttctctcctcttgcacc 260

                                                                       
Query: 61  acaaaagcttttatactttaatgtatggctcttttacgatatatttttatttattctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaagcttttatactttaatgtatggctcttttacgatatatttttatttattctgta 320

                     
Query: 121 catgtgtaat 130
           ||||||||||
Sbjct: 321 catgtgtaat 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)