BAC Information

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BAC

Clone NameMSMg01-201P10
Chromosome14 (Build37)
Map Location 102,220,094 - 102,220,304
singlet/doubletsinglet
Overlap geneLmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
Downstream geneLOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201P10.T7 (MSMg01no201_p10.b1)MSMg01-201P10.TJ (MSMg01no201_p10.g1)
ACCAG387306AG387307
length732791
length of high quality
(start - end)
124 (122 - 245)212 (77 - 288)
definitionCHROMAT_FILE: MSMg01no201_p10.b1 PHD_FILE: MSMg01no201_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:36 2005CHROMAT_FILE: MSMg01no201_p10.g1 PHD_FILE: MSMg01no201_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCATTGCTTATATCTGCCCACCACTTCACCATCTGATGCACCTGT
CACTCTCACTGGATGCTCCGGAGCTGCTGTTGGGTTTTAGAGTCTGTTGT
GTTGGGATGCTTTTTTGCAAAGTTCAGCTTCTGTGCTTCACATTTCTTAG
TGGTAAAATAGAAAGAAGAGGAGGAGGAGGAAGGGGAGGAGGANNNNTTT
TTNNNNNNNNNNNNTTNNNNNNTNTTTTTTTTTTNNTNNTTGTTNNTNNN
NNNNNNTTTTTTTTTTTTNNGNNNNNNNNNNNNNNNNNNNNNNNNNTTTT
TTTTTTTCCCCCCCCCCCCCCCCNNNNNCNNNNNNCCCNGNCNGGNCGGT
TTTTCCCCCACAAAAAAAAAAAAAATTTTGCGGGGGGGTTTCTTTACGCC
CCTTTTTTTTTTTACCCCATTCCCCGTTATTCCCCTCCCCTTGCCCTATA
GCCATTTTCCCTTTTTCTCCTCCCCACCTCCAATTATTGTACCCACTATT
TTATTATCCTCTTTCTTCCTTTTCTCTTCAACATAGTCATAATTTCCCAT
TCACCCTCCTCTGTATTTACTTCCTATTTTTCATTCCTCCAGCCCCTCAA
CCGCTCCCACAATTTTTATTATTGAAGACTTATTTCTAATCTCTCTCTTT
TCCCTCCACCGCTTCCCTTTTTTTTAATATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCCACATGTTCTGAGGTAGA
ACTGAGAACTCAGAGTCATCTCCAAAATCAGCAGAAAACAAAAGATGCCC
AAGGAGAGGACAGATCCCTGGATCCTAAGTAACTGTTTCATCTTGCTACT
CTATAGACATGTAGACGTCTTAGGCTCTGATGTGTTTTCTGGGTTGGTTG
GTCCGTAGGTTGGTTAGGAGGTAGGTTAGTTTTGTTTNNNNNNNNNNNNN
NNNNNNNNTNNNNNTTTTTTTTTTTNTNNTTTTTTTNNCCTTTTNNNNNN
NNNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTCCCCCCCAAAAAAAAAAAAAAATTGGG
GGGGGGGGGGGGGGGGGCCTTCTCCCTTTCCTTCTTTCTTTTTTCGTTTC
TTTTTCTTCGCCTCTTTGCTCTTTCCCTTCCGTTTCTCTCCCTTCTTTTT
TCTCTCCGCTCGCTCCCTTGCCTTGCCGTCTTNTTTTCTGTTTCTTCCCG
TTCTTTTTTTTTTTTCCGTCCCCCTTTTTTGCCTCTTTATTCCCTTTGCT
TCTTTTGTACTGGTCCTCCCCCCCCCCCCTTCTCTTCACCCTCCTGATTT
TATTTTGCTCTCGTGTTTGCTTTCTGGCACGCCAGTGAACTGCCTCAATA
CCTTATGTCTCACATCCTGCCGCGCCCTCTCTTTTTGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_p10.g1 MSMg01no201_p10.g1 CHROMAT_FILE:
MSMg01no201_p10.g1 PHD_FILE: MSMg01no201_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:36 2005
         (212 letters)



>mm_chr14_102219894_102220505
          Length = 612

 Score =  393 bits (203), Expect = e-114
 Identities = 209/211 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttccacatgttctgaggtagaactgagaactcagagtcatctccaaaatcagcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 actttccacatgttctgaggtagaactgagaactcagagtcatctccaaaatcagcagaa 352

                                                                       
Query: 61  aacaaaagatgcccaaggagaggacagatccctggatcctaagtaactgtttcatcttgc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacaaaagatgccccaggagaggacagatccctggatcctaagtaactgtttcatcttgc 292

                                                                       
Query: 121 tactctatagacatgtagacgtcttaggctctgatgtgttttctgggttggttggtccgt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tactctatagacacgtagacgtcttaggctctgatgtgttttctgggttggttggtccgt 232

                                          
Query: 181 aggttggttaggaggtaggttagttttgttt 211
           |||||||||||||||||||||||||||||||
Sbjct: 231 aggttggttaggaggtaggttagttttgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)