BAC Information

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BAC

Clone NameMSMg01-201P21
Chromosome14 (Build37)
Map Location 33,335,556 - 33,335,921
singlet/doubletsinglet
Overlap geneErcc6
Upstream geneColq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618
Downstream gene9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201P21.T7 (MSMg01no201_p21.b1)MSMg01-201P21.TJ (MSMg01no201_p21.g1)
ACCAG387324AG387325
length717830
length of high quality
(start - end)
375 (42 - 416)74 (84 - 157)
definitionCHROMAT_FILE: MSMg01no201_p21.b1 PHD_FILE: MSMg01no201_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:38 2005CHROMAT_FILE: MSMg01no201_p21.g1 PHD_FILE: MSMg01no201_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCCTTCTTTCCACTTTACTCAATGGGCTTCTTTCCTCTTCTCAGACAG
GACCATGTGTGGCTGAATAGAGAAGGGAAGCAAGTGTGCCTGCTGCCCTG
CAGGTCACACTGGCTAAGGCAGATCTCCAATCTGTCCTCATCCCACCTAC
ATGCAGGAAGGGGCTGCTGCTAAGCTGCATAACCACCATGTGGAAGCAGT
GCAGACATGTCCCCAGGGAAGCATGTGGGCAGCACACCCAACATCTGCTA
CATGGCTTCAGATGGGCTGATAGAGGTCCACCCAGCAGTACAGAGCCAGG
CTCCCCAAAGCCTGGCTACTGGCATTCAGCTATACAGCCTCTGCAGACAG
GGCCCAGTCTCCACCCCCCCCTAGTGGNCAGACGGGAAAGTATCCTGGGG
ACCAAGAGCTCAGAAAAAAAGGGGCTATGGATTTGTAAGGCGTCAGATCT
CAGGTAGCTGCAAAACCCATGGGAAATGGAGGAGACAGACAAGGAGAGGA
AGCAACACGAACACTCAACATGTCCTAAGCAGCATCAGCATTTAAGATAC
TGCTGGATAAGTTACCAACAATAACAAACCAGAACCAATCAGAGGGCAGA
TAATAAGCCAGGAGACAGGAGTCCGACACTCTCTCAAGCATCATCAGGCT
GAACCTGGCAAAGGTGA
NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCAGATACTACAGAGGAG
TGCCTGCAAGTAGGTCTGCTCGCTCTGATGGGTCTGAAGCGGGAGAGTGG
GGGTGGGGCGTNGTNATTTNTTTTTNNCCTCCCCCCTTCTTCCTTTTTTT
CTCTTTTTTTTTTTTCNCCNNCTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTCCTCTCTTTTTTCTTTTTTACCCCCCTCCCCCCCCCCCTT
TTCCCCCATTTTTTTTTTTTTTTTTCCCTCTTTTTTTCTTCCTTTTTCCC
CCTTTTTTTTTCTCCCCCCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTGTTGTCTGACATTCTCTCTCTTTANANAATTTTATTTGTC
CTTTTTCTTTTTTCTTTTTTTTTTTTTTTTCCTGCCTCTCCTCTCCTCTT
TCTTTTTTTTTCCTCTCCCTCTCCTTCCTTTTTTTCTCTTTCTCTCCTTT
TCTCTCCTTTCCTTTTCTTCCTTTTTTTTTTTATTATTTATTTTTTTTTC
TTTCTTTTTCTTTTTTCTTCCCCGCTCTTCCTGTCTCCTCTTTTTTCCTT
TCTTTTTCCCTCCCCCCTTTTTTCTCCCCCTTTTCCTCTTCTTATTTTTT
CCGTTTCTCTTTTTCTTCTCATTCTCCCCCCTCCCTCTTTTTTTTCTTTT
ATTTCTTCTTTTATCACAACTTTTATTTTCTTTTATTCATTTTTTTTTAT
TTTCTTTTATTCTCTTCTATTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_p21.b1 MSMg01no201_p21.b1 CHROMAT_FILE:
MSMg01no201_p21.b1 PHD_FILE: MSMg01no201_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:38 2005
         (375 letters)



>mm_chr14_33335349_33336124
          Length = 776

 Score =  669 bits (346), Expect = 0.0
 Identities = 361/366 (98%), Gaps = 1/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattccttcttt-ccactttactcaatgggcttctttcctcttctcagacaggaccatg 66
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattccttctttcccactttactcaatgggcttctttcctcttctcagacaggaccatg 514

                                                                       
Query: 67  tgtggctgaatagagaagggaagcaagtgtgcctgctgccctgcaggtcacactggctaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgtggctgaatagagaagggaagcaagtgtgcctgctgccctgcaggtcacactggctaa 454

                                                                       
Query: 127 ggcagatctccaatctgtcctcatcccacctacatgcaggaaggggctgctgctaagctg 186
           |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 453 ggcagatctccaatctgtcctcatcccagctacatgcaggaagaggctgctgctaagccg 394

                                                                       
Query: 187 cataaccaccatgtggaagcagtgcagacatgtccccagggaagcatgtgggcagcacac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cataaccaccatgtggaagcagtgcagacatgtccccagggaagcatgtgggcagcacac 334

                                                                       
Query: 247 ccaacatctgctacatggcttcagatgggctgatagaggtccacccagcagtacagagcc 306
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 ccaacatctgctacatggcttcagatgggctgaaagaggtccacccagcagtacagagcc 274

                                                                       
Query: 307 aggctccccaaagcctggctactggcattcagctatacagcctctgcagacagggcccag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aggctccccaaagcctggctactggcattcagctatacagcctctgcagacagggcccag 214

                 
Query: 367 tctcca 372
           ||||||
Sbjct: 213 tctcca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space:   280722
Effective search space used:   280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)