BAC Information

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BAC

Clone NameMSMg01-202J21
Chromosome14 (Build37)
Map Location 103,062,344 - 103,062,650
singlet/doubletsinglet
Overlap genenone
Upstream geneUchl3, Lmo7, LOC100043795, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202J21.T7 (MSMg01no202_j21.b1)MSMg01-202J21.TJ (MSMg01no202_j21.g1)
ACCAG387703AG387704
length757721
length of high quality
(start - end)
69 (36 - 104)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no202_j21.b1 PHD_FILE: MSMg01no202_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:29 2005CHROMAT_FILE: MSMg01no202_j21.g1 PHD_FILE: MSMg01no202_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGT
TTACCCCTATGCCCCATTTCTTGACTGGGTTGTTTGGTTTCTTGGTGATT
AGCTTCTTGNACATATATATATATATATATATATATATATATATATATAT
ATATATATATATATAGAGAGAGAGACCCATATNCATNTACCCACCCCCCT
CCCCCCCCACCCCCCCCCATCTTCCCACCCCCCCCCCCTCCCCCCCCCCC
CCCCTTTCTCCCCTCCCCCCCCCCCTTGTGCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCTTCCCTTCCTTCTCCCCCCCCCCGATTGCCCAAGGCCTT
TTTTTTCCCCCCCCCCCCCCCCCCCGTTGATGGCTGGGTGCCCCTGTTCC
CCTCCCCCCCCCCCCCCCCAACAACCCCCCCCCCTTGGCCCCCGCCCCCT
CACCTCCCCCCCTCCCCCCTCTCCCCCCCCCCCCCCCCCCTCCGCCCTCC
CGCCCCCCCCCCCCCCCCCCCCCCCCTTTCCCCCCCCCCCCCCCCCCCCC
CCCCCTCCCCCCCCCCTCCCCCTTCCCCTTCCCCCCCTCCTCTCCTCCCT
CCCCCCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCC
CCCTCCCTTTCCCCCCCCCCCCCCCCCCCCCTTCCCCCCTCTTTCCCCCC
CCCTCCCCCCCCCCCTCCTCCCACCCCTCCTCTCCCCCCCTCCCCCCTTC
CCCGTCT
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTATTGTCGCTCCTGATTTTCATT
TGACATTTTGCAACTGACCTGAATCCCCTCTTCATGTTCCAGAGAGAGAG
CAAGAGAGAGGAGGTTTTGAACAGTCAGAGTAGGTTTAAAAATGAGTATG
TGAAAATATTGAGTAATAAATATTTTAATTCAAGACTAATTCCTAAGTAA
TGTAAAACAGAATAATTCTAATTCAGACAGGCTTCTGCAGTTCAATACAG
AATAATTCTAATTCAGACAGACTTCTGCAGTGCAGAAGAACAAACAGCTG
GGAACGTTTGTTTTCTTCCAGTCTGACCCCCTAGGGACAGGCTACTCCTG
TTCATGGAAATCTTAGCATTCACACTTCCACTGTAAGACCTATCATGGTT
GATAGTTTGTCTTTTGTAATTTTCAACTGATTTCTCTCCATAAGAAAGAG
AAATTAATTTTGCTCTAAATTTAATGGCTGTAATAATAAGGTGCGGACTC
TATTTTTTCTACTGTCTTGATAACTGTTTTTGCTTTTCGATTTTCTTGTG
CTTGATATTACTGATTTATATTTCTTCCATTTGTGTACTTCATCTCCGTA
TTCACTCTTCTATTTCCTCTCGTTTTTCTTTTCTTAACGCCCTTGTGTAT
ACAATGATACTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_j21.g1 MSMg01no202_j21.g1 CHROMAT_FILE:
MSMg01no202_j21.g1 PHD_FILE: MSMg01no202_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:29 2005
         (282 letters)



>mm_chr14_103062166_103062850
          Length = 685

 Score =  451 bits (233), Expect = e-131
 Identities = 278/309 (89%), Gaps = 29/309 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttattgtcgctcctgattttcatttgacattttgcaactgacctgaatcccctcttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 179 atttattgtcgctcctgattttcatttgacattttgcaactgacctgaatcctctcttca 238

                                                                       
Query: 61  tgttccagagagagagcaagagaga----------ggaggttttgaacagtcagagtagg 110
           ||||||||||||||||  |||||||          |||||||||||||||||||||||||
Sbjct: 239 tgttccagagagagag--agagagagcgtgagatgggaggttttgaacagtcagagtagg 296

                                                                       
Query: 111 tttaaaaatgagtatgtgaaaatattgagtaataaatattttaattcaagactaattcct 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttaaaaatgagtatgtgaaaatattgagtaataaatattttaattcaagactaattcct 356

                                                                       
Query: 171 aagtaatgta------------aaa--cagaataattctaattcagacaggct---tctg 213
           ||||||||||            |||  ||||||||||||||||||||||||||   ||||
Sbjct: 357 aagtaatgtattatcccctaggaaatacagaataattctaattcagacaggctgcttctg 416

                                                                       
Query: 214 cagttcaatacagaataattctaattcagacagacttctgcagtgcagaagaacaaacag 273
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 417 cagttcaatacagaataattctaattcagacagacttctgcagtgcagaagaacaagcag 476

                    
Query: 274 ctgggaacg 282
           |||||||||
Sbjct: 477 ctgggaacg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 685
Length adjustment: 9
Effective length of query: 273
Effective length of database: 676
Effective search space:   184548
Effective search space used:   184548
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)