BAC Information

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BAC

Clone NameMSMg01-203L16
Chromosome14 (Build37)
Map Location 113,605,053 - 113,605,346
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203L16.T7 (MSMg01no203_l16.b1)MSMg01-203L16.TJ (MSMg01no203_l16.g1)
ACCAG388386AG388387
length756765
length of high quality
(start - end)
322 (45 - 366)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no203_l16.b1 PHD_FILE: MSMg01no203_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:59 2005CHROMAT_FILE: MSMg01no203_l16.g1 PHD_FILE: MSMg01no203_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGATACCGAATGGCAGGGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAACCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGTTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCTTCAGAA
AATTGGACATAGTAATACCGGAGGATCCAGCAATACCTCTCCTAGGCATA
TATCCAGAAAATGCCCCATTTGGTAACACACCACACATGCTCCACTATAT
TCATAGCAGCCTTATTTACCCCACCCAGAAGCTGGAAAAAACCTAGATGT
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAAGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTA
TGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAA
GCATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAACA
AAACCC
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAAGTACAAAGCTATGAGA
AAACGCTTACTATAGAATTTCAGTTAAATCCAATGTTTGAAAGAAGAATA
TATGAACTTATTACCAAAGAGAAGTCATTGTTATGAAACAAGTTCCTCCT
AGAAAAATATAATTGATATATATGTTCATAAATATGAATATATACATGTA
TATACATATGTATATATATGTATATATACATATAGAGAAAGCTGAGATTT
CTTTCATGAGTGTGTGTGTCTCTGTGGGTGTGTATGTGCATGTATGTAGA
TGAGTGTGTGAGTCCCATTTTTTTTTCCCCCCCCCCCCCCATAGAAATTC
CATCTCTTATTGTAGGGGGGCCCCCCCCCCAAAAAAAAAACANTTTAGAG
AGAGGGCCGACAAATTACATTCGAAACAGATCTCGTACTGTGCATGCCTG
CACTATGTCATGGATGCTTAGCCTGTGAAATGATATTACGTGTACACCTG
TCTAATACGCGCGCATATGTTTCCTATTGTTCAATTGTATTTTGAACACC
CTGTTCGATCAGTTTTTTCCAAAAATTGTCTTTCGTAATGTTTATGTTTT
CTTAACCCTTTTGTGCCTATCTCTATGTTTCCTCCTTTTTCGTTAGCATT
TATCTTTTTTTTTTCATCCCTCCCGTTTTCTTTCCTTCCCCCTTTTTTTC
ATTCCTTTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_l16.g1 MSMg01no203_l16.g1 CHROMAT_FILE:
MSMg01no203_l16.g1 PHD_FILE: MSMg01no203_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:59 2005
         (290 letters)



>mm_chr14_113605009_113605698
          Length = 690

 Score =  429 bits (222), Expect = e-125
 Identities = 273/302 (90%), Gaps = 20/302 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaagtacaaagctatgagaaaacgcttactatagaatttcagttaaatccaatgtt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||
Sbjct: 338 catgaaagtacaaagctatgagaaaacgtttactatagaatttcagttaaatgaaatgtt 279

                                                                       
Query: 61  tgaaagaagaatatatgaacttattaccaaagagaagtcattgttatgaaacaagttcct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgaaagaagaatatatgaacttaataccaaagagaagtcattgttatgaaacaagttcct 219

                                                                       
Query: 121 cctagaaaaatataattgatatatatgttcataaatatgaatatatacatgtatatacat 180
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 218 catagaaaaatataattgatacatatgttcataaatatgaatatatacatgtatatatat 159

                                                                       
Query: 181 atgtatatatat------------gtatatatacatatagagaaagctgagatttctttc 228
           || |||||||||            ||||||||||||||||||||||||||||||||||||
Sbjct: 158 atatatatatatatatatatatatgtatatatacatatagagaaagctgagatttctttc 99

                                                                       
Query: 229 atgagtgtgtgtgtctctgtgggtgtgtatgtgcatgtatgtagatgagtgtgtgagtcc 288
           |||||||||||| ||||||||        |||||||||||||||||||||||||||||||
Sbjct: 98  atgagtgtgtgtatctctgtg--------tgtgcatgtatgtagatgagtgtgtgagtcc 47

             
Query: 289 ca 290
           ||
Sbjct: 46  ca 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)