BAC Information

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BAC

Clone NameMSMg01-204N22
Chromosome14 (Build37)
Map Location 11,203,331 - 11,203,474
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204N22.T7 (MSMg01no204_n22.b1)MSMg01-204N22.TJ (MSMg01no204_n22.g1)
ACCAG389071AG389072
length737781
length of high quality
(start - end)
377 (46 - 422)144 (79 - 222)
definitionCHROMAT_FILE: MSMg01no204_n22.b1 PHD_FILE: MSMg01no204_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:34 2005CHROMAT_FILE: MSMg01no204_n22.g1 PHD_FILE: MSMg01no204_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTATCTCTGTACCCCATTTTTAATGGGGTTATTTGAATTT
CTGGAATTCAGCTTCTTGATCTCTCCGTATATATTGGATATTAGTCCCCT
ATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTCTCTTTTGCCTTACAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCAATACTTGATCTTACAGCATAAGCCATTGCTGTTCT
GTTTAGGAATTTGTCCCCTGTGCCCATATCTTCGAGGCTTTCCCCCACCT
TCTCCTCTATTAGTTTTAGTATCTCTCATTTTATGTGGAGGTCTTTGATC
CACTTAGATTTGAGCCCCCCCCACCCCAATAAGAATGGATCAATTTGCAT
TCTTCTACATGATAACTGCCAGTTGGGCCAGCACCATTTGATAAAAATGC
TGTCTTTTTTCCACTGGATGATTTTAGCCTCCTGGTCAAAGAACAAGTGA
CCATAGGTGTGTGGGTCCATTTCTGGCCCTTCAATTCCATTTCCTTGATC
TTACCGCCTGTCCCTTGCACATTACTCATCATGCTATTTTTCTTCTCCCC
TATCTTTACCTATACTCCCCATTATTATCCAATACCCTGCCTATCTCCCT
CTTTTTCTTCTCTTTTTCTTCTTTTCTTCTTTTTCTT
ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGGGGTCAAGAACCCTGTC
AGACCTGGAAATTTCCTTCTCCGGGAAAGGAATATATTTTCTTATAGTTG
GATTTAGGTTTGTGGAATAGTTTTCTATATAGCATAAGACAGCCACAGAA
TAGCATGTTGGGGATGGGGGAATTTCCCCCCTNCCCCCTCCCCTCCTCTC
CTGCCAACCCTTCACCCCCATCTCTACTCCACCATATCTCACTATTAAAG
ACCACCTACACATTACAATAATAATTTTTTTTCCTCTCCCCTCCCCCCAC
CATCCCCACTCCCTTTTTTTTTTCCCCCCCACCCCCCCCTTTTACACCTT
TGTCCTTGTTTTTTTTTATGTGGCCCCCCCCCCAAAAAAAAAAAAAAAAA
ATAAANAAAAAATTANAATAAAAATATAAATTAAAATATATATTTTTTAT
TATTATTGTTTATTTAAAATATAACCTTTATATTTCTCCTCTCCCCCTCC
TTCACATATCCCCCGCAATTTTCACCTCCTCCCCACCTCCCTCTCCCCTC
CCCTTTCTCTTCTCCCCTCCTCTCCTTTTCCATTTATCCCCCCGATTCAT
CTTTCCTCCCCTCTCATCATCACTCTACCTCTTTTATCCACCCCTTCCCC
TTCCCAACGACTACATTACACCTAATACCTCCCTCACCCAAACCCCACAT
TCCTATATCTCATTTTACACCTCCCCTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_n22.g1 MSMg01no204_n22.g1 CHROMAT_FILE:
MSMg01no204_n22.g1 PHD_FILE: MSMg01no204_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:35 2005
         (144 letters)



>mm_chr14_11203131_11203674
          Length = 544

 Score =  271 bits (140), Expect = 1e-77
 Identities = 143/144 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctggggtcaagaaccctgtcagacctggaaatttccttctccgggaaaggaatatatt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctggggtcaagaatcctgtcagacctggaaatttccttctccgggaaaggaatatatt 260

                                                                       
Query: 61  ttcttatagttggatttaggtttgtggaatagttttctatatagcataagacagccacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttatagttggatttaggtttgtggaatagttttctatatagcataagacagccacag 320

                                   
Query: 121 aatagcatgttggggatgggggaa 144
           ||||||||||||||||||||||||
Sbjct: 321 aatagcatgttggggatgggggaa 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)