BAC Information

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BAC

Clone NameMSMg01-205C07
Chromosome14 (Build37)
Map Location 80,832,941 - 81,004,439
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneEG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205C07.T7 (MSMg01no205_c07.b1)MSMg01-205C07.TJ (MSMg01no205_c07.g1)
ACCAG389237AG389238
length730731
length of high quality
(start - end)		322 (46 - 367)297 (76 - 372)
definitionCHROMAT_FILE: MSMg01no205_c07.b1 PHD_FILE: MSMg01no205_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:57 2005CHROMAT_FILE: MSMg01no205_c07.g1 PHD_FILE: MSMg01no205_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,004,124 - 81,004,439)(80,832,941 - 80,833,237)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGTTATTTGTTTGAAAATAAAAAGTTCATTATTGTCTAGTCAT
GAAACTTTCAATGTTTCAATTGCAAGACGGATTTGTAATAGTCTACACAC
AGTATAAGAATGTAGTTCAAAACAAAATAAAAGCACATTGAAACCTAACC
GCTGTAGTTATTATTTACATGATAATCTAATGAGCTTGGCTGACACCGTG
GGTCTCCTTTAATACCTGAAATTGGAAAAATTTTATATTTCTAAGGTGAT
GTTTAAAACTGCATTTCTTATAACTCATAAAAACTATGTTGATATATGGT
AATCCGTCACGTCTATTATGATAACCCCCCCCCTTGGAAATTCCATCTCT
ACTAATCTTACTCAAAGGAACAGCTGCCAACATCTAGTATTTCTCTGTCC
AAATTTTATTCCTACTTACAAATGAATATTTTAAAGTGATTTATCAGAAG
CTCCTTAATTCCAAGTCCAATCTGGCCTGAAAAGATAGGCGCCATAAATT
TGTGAGAACTCCTGGGGTATTTCCCAGTTTAGCCTAGCTTCTAGTTGACA
TCCTTTGGTAAGTCAGCTCTCATTATTTTGTTCAATTCTCAGGGATCAGT
CAGAGCTTCAGGTCTTATTGCCTATATTCCCTCCAGAGGAGTTCTGAGAT
ATGTCAGATTACTCTTTGTTTTCCCCAATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCACCAATTAATGCTGATGGTTT
TGAGTTACAGAGACGAGAGTATGCTCACAAATGAAAGTGTTCATTTCTAA
GTTGTGTTTTGCTGTAGCTGAGAGTTTTCCAAGTAAATATTCACAGACTT
TATTGAATACTTGTATTAGATAATGAAATCACAAGCTTCCAGAACATGAG
GTTTGAATATTATTTATCTAAAAAACTTTTCAATTGTTTAATAGGGAGGC
AATTGAAAATACATTTTAAAAATACTTTAAGTAATTGACCAAGTTTGTTT
CCTTGTGAAAGTTAACTGTGAAGTTCACACCAACTGAGCAAACAATCTTA
GCTGGGACATTTGTTGTGGTTGTTATTGTTTTGCTGTTAGAAAGAACTTG
CTTTTTGTTGATGTTTTTAGTGCATAGGTGGGGACTTCAGAAAGATAGAG
GGAGACAAAAAGAGATCTAGAGTGAATGCACAGAGCTCCTGCTTATCAAG
AGGTCTGCATACAGCTGTTAGTATGGGACTGTTGAAAGAACTTATTTCAG
AAAGTGGCTGAGGTATGGGCAGAGGGATGAGCTGGCCCACAAAATTGTCC
ATGTGTCTCATCCCAGTCCTGTCCTGTACTTACAGCATCTAGGCAGAGGT
GGTCATCTAGGATATGAGAAAAAAACTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_c07.b1 MSMg01no205_c07.b1 CHROMAT_FILE:
MSMg01no205_c07.b1 PHD_FILE: MSMg01no205_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:57 2005
         (322 letters)



>mm_chr14_81003920_81004641
          Length = 722

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgttatttgtttgaaaataaaaagttcattattgtctagtcatgaaactttc 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 520 gaattcaatgttatttgtttgaaaataaaaagttcattattgtctagtcatgaaacttgc 461

                                                                       
Query: 65  aatgtttcaattgcaagacggatttgtaatagtctacacacagtataagaatgtagttca 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aatgtttcaattgcaagatggatttgtaatagtctacacacagtataagaatgtagttca 401

                                                                       
Query: 125 aaacaaaataaaagcacattgaaacctaaccgctgtagttattatttacatgataatcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaacaaaataaaagcacattgaaacctaaccgctgtagttattatttacatgataatcta 341

                                                                       
Query: 185 atgagcttggctgacaccgtgggtctcctttaatacctgaaattggaaaaattttatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 340 atgagcttggctgacaccgtgggtctcctttaatacctgaaattggaaaaaatttatatt 281

                                                                       
Query: 245 tctaaggtgatgtttaaaactgcatttcttataactcataaaaactatgttgatatatgg 304
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 280 tctaaggtgatgtttaaaactgcttttcttataactcaaaaaaactatgttgatatatgg 221

                           
Query: 305 taatccgtcacgtcta 320
           ||||||||||||||||
Sbjct: 220 taatccgtcacgtcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no205_c07.g1 MSMg01no205_c07.g1 CHROMAT_FILE:
MSMg01no205_c07.g1 PHD_FILE: MSMg01no205_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:57 2005
         (297 letters)



>mm_chr14_80832741_80833437
          Length = 697

 Score =  559 bits (289), Expect = e-164
 Identities = 295/297 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcaccaattaatgctgatggttttgagttacagagacgagagtatgctcacaaatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgtcaccaattaatgctgatggttttgagttacagagacgagagtatgcttacaaatgaa 260

                                                                       
Query: 61  agtgttcatttctaagttgtgttttgctgtagctgagagttttccaagtaaatattcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgttcatttctaagttgtgttttgctgtagctgagagttttccaagtaaatattcaca 320

                                                                       
Query: 121 gactttattgaatacttgtattagataatgaaatcacaagcttccagaacatgaggtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactttattgaatacttgtattagataatgaaatcacaagcttccagaacatgaggtttg 380

                                                                       
Query: 181 aatattatttatctaaaaaacttttcaattgtttaatagggaggcaattgaaaatacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatattatttatctaaaaaacttttcaattgtttaatagggaggcaattgaaaatacatt 440

                                                                    
Query: 241 ttaaaaatactttaagtaattgaccaagtttgtttccttgtgaaagttaactgtgaa 297
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaatactttaagtaattgaccaagtttgtttccttgtgaaagttaactgtgaa 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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