BAC Information

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BAC

Clone NameMSMg01-205C13
Chromosome14 (Build37)
Map Location 74,960,416 - 74,974,772
singlet/doubletdoublet
Overlap genenone
Upstream geneSucla2, LOC100043734, EG629578, LOC629583
Downstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205C13.T7 (MSMg01no205_c13.b1)MSMg01-205C13.TJ (MSMg01no205_c13.g1)
ACCAG389247AG389248
length720711
length of high quality
(start - end)
327 (46 - 372)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no205_c13.b1 PHD_FILE: MSMg01no205_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:58 2005CHROMAT_FILE: MSMg01no205_c13.g1 PHD_FILE: MSMg01no205_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,960,416 - 74,960,736)(74,974,485 - 74,974,772)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTTTTGAAAAGAAAGATTCCTGTAATTGTGGAGTATCAAAGCATGTGA
TCTGGTGTGGAAAACTGGCACATTCACTTCTCTGAAAAAAACTACAAAGA
CTAGCTGTTGGGAGGGTCTGCTGATAAGAAAGGCAGCAAACAGTGTCCTC
ACGCAAGGTGTCTCATAGATCAGTCCTACCAGAAAGAGATGTCCAAGTAC
TCATGCCTTCTAATGATAACTATTTTGAAACCAGATGTTGGCTAAAACAA
GTCCCATGAAAGACACACTGCTACTTTCAATATCTATTTTTAAATATTTG
TTAATATTGCACATGTCTTTACAAATGGCAGAAAGAAAGGAAGAAAGAAA
GAAAGAAAGAAAGAAAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGCAGA
TGCCATGACATATATGAGGAGTCAGAGGAAAATCATGGAGTCAGTTCTCT
CCTTCCATCATATGAGTACCAGGAACTTTAATCATGTCATCTTGCTTGAT
GGCAAGCACCTTTTTCCCACTGAACTATGTCACCTGCCTATATATATATA
TATATATATATATATAACGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAAGTTTGGGGCTAGAGATCTCC
AATGGTAGGTAGACACTAAGAGGGAAGGAACATGAATATGTTAAGCTAAT
AGGGAGAACTTAAATAAAGTTGGGTCTCTGTGTCTGAGTCGTGGAGACCA
GGAAATCTTGAGCATCAAGCAGAGATCATTCACAGGTTTGACAAATGTGT
GAGGTGGTTTATATGCTTAGAGAGTAGCACTATTTAACGAATTCGAGGTA
TGGTCTTGTTGGAGGAAGTGTGTCATTGGGAGTGAACTTTGAGGTTTCAA
ACACTCAAGCCAGTTCTAGTGGCTCTCTCTTCCTGCTGCCCATGGATCTG
TATGTAGCACTCTCAGCTCTTTATTCAAGAACATGGCTTCTTGTGCTACC
ATGCTTCCTGCCATGCTGCTAAGAAACTAAACCTTTGAAATTGTAAGCCA
GCCACAATTAAATGTTTTCCTTTGTAAGAGTTGCTGTGATCATGTTGTCT
CTTCACAGCAATATACAAGTGACTAAGACAGTATAGTAGACTGGTAAAGA
TTGTATTGGTAGAGGAATGAGTAAACATGGGAGAGGTGGACTCAGGGAGA
AAAACACTGATGCTTAACTGTGATGGAACTTGTTAGGAGAACATGGTAAG
GCCAGACTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_c13.b1 MSMg01no205_c13.b1 CHROMAT_FILE:
MSMg01no205_c13.b1 PHD_FILE: MSMg01no205_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:58 2005
         (327 letters)



>mm_chr14_74960211_74960937
          Length = 727

 Score =  605 bits (313), Expect = e-177
 Identities = 319/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aatttttgaaaagaaagattcctgtaattgtggagtatcaaagcatgtgatctggtgtgg 65
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 206 aatttttgaaaagaaagattcctgtaattgtggagcatcaaagcgtgtgatctggtgtgg 265

                                                                       
Query: 66  aaaactggcacattcacttctctgaaaaaaactacaaagactagctgttgggagggtctg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaactggcacattcacttctctgaaaaaaactacaaagactagctgttgggagggtctg 325

                                                                       
Query: 126 ctgataagaaaggcagcaaacagtgtcctcacgcaaggtgtctcatagatcagtcctacc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgataagaaaggcagcaaacagtgtcctcacgcaaggtgtctcatagatcagtcctacc 385

                                                                       
Query: 186 agaaagagatgtccaagtactcatgccttctaatgataactattttgaaaccagatgttg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaaagagatgtccaagtactcatgccttctaatgataactattttgaaaccagatgttg 445

                                                                       
Query: 246 gctaaaacaagtcccatgaaagacacactgctactttcaatatctatttttaaatatttg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctaaaacaagtcccatgaaagacacactgctactttcaatatctatttttaaatatttg 505

                                
Query: 306 ttaatattgcacatgtcttta 326
           |||||||||||||||||||||
Sbjct: 506 ttaatattgcacatgtcttta 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no205_c13.g1 MSMg01no205_c13.g1 CHROMAT_FILE:
MSMg01no205_c13.g1 PHD_FILE: MSMg01no205_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:58 2005
         (289 letters)



>mm_chr14_74974399_74975087
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaagtttggggctagagatctccaatggtaggtagacactaagagggaaggaacatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttgaagtttggggctagagatctccaatggtaggtagacactaagagggaaggaacatga 315

                                                                       
Query: 61  atatgttaagctaatagggagaacttaaataaagttgggtctctgtgtctgagtcgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atatgttaagctaatagggagaacttaaataaagttgggtctctgtgtctgagtcgtgga 255

                                                                       
Query: 121 gaccaggaaatcttgagcatcaagcagagatcattcacaggtttgacaaatgtgtgaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaccaggaaatcttgagcatcaagcagagatcattcacaggtttgacaaatgtgtgaggt 195

                                                                       
Query: 181 ggtttatatgcttagagagtagcactatttaacgaattcgaggtatggtcttgttggagg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggtttaaatgcttagagagtagcactatttaacgaattcgaggtatggtcttgttggagg 135

                                                           
Query: 241 aagtgtgtcattgggagtgaactttgaggtttcaaacactcaagccag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aagtgtgtcattgggagtgaactttgaggtttcaaacactcaagccag 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)