BAC Information

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BAC

Clone NameMSMg01-205H03
Chromosome14 (Build37)
Map Location 94,736,694 - 94,736,980
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205H03.T7 (MSMg01no205_h03.b1)MSMg01-205H03.TJ (MSMg01no205_h03.g1)
ACCAG389435AG389436
length731732
length of high quality
(start - end)
587 (46 - 632)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no205_h03.b1 PHD_FILE: MSMg01no205_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:19 2005CHROMAT_FILE: MSMg01no205_h03.g1 PHD_FILE: MSMg01no205_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTTATCAATACTGAATGGCTGAGAAGCACCTGAAAAAATGT
TTAGCATCCTTAATTATCAGAGAAATGCAAATCAAAACAACCCTGAGATT
CAACCTCACACCAGTCAGAATGGTTACTTTCAAATTTCTTTATATATATA
TATATATTTAATTAAGTATTTTCCTCATTTATATTTCCAATGCTATCCCA
AAAGTCACCCATACCCTCCCCACCACTCCCCTACCCACCCACTCCAACTT
CTTGGCCCTGGTATTCCCCTGTACTGGGGCATATACAGTTTGCAAGTCCA
GTGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATA
TGCAGCTAGAGTCAACAGCTCAGGGGTACTGGTTAGTTCATGATGTTCTT
CCACCTACAGGGTTGCAGATCCCTTTAGCCCCTTGGGTACTTTCTCTAGC
TCCGACATTGAGGGCCCTGTGATCCATACAATAGCTGACTGTGAGCATCC
ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGAGAGCTCTAT
CTGGGTCTTTTCAGCAAAATCTTGCTAGTGTGTGCAATGGTGTCAGCGTT
TGGAAGCTGATTATGGGATGGATCTCCGGATATGGCAGCAAATGTTTTCA
TATTTTATATAAGTTTCAGTCAGAACTTCAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAGTACTACCTTTGTCAATTAT
CCACAGCATTTGTCAAATTCCTTCTACCAGTGAAATATTCCTATCTCTAA
CTGAAAGTACAAACTTTAACAATATGATTATGAGAGATGATTTTAAATGC
ATATTAATTACTTTGATATTATTTTTTTCTCCTCACTTAAGTTAATCTAT
GTAAAAACATAATCATTTACAGATTGCAAATAAATATCCCCAGGTAACTT
TCTTTCATTTGAATATGTCTTATCTTTTCTATTTTCTAACCATATACCAC
AGAATGTACAATTAATTCATATCCTACCACATATATGAATTAACATATCA
TTGGCATCTAATTAGCACTTTTAGACTTCATTGAGTTTTATTTTTTTTAA
ATATGTGAGGGTGTTTTATCTGAATACGTATACATGTACCTTGTACACAC
AGCGTCCTTGGAGGCCAGCAGGAAGCGGAGAATTCCAAGTAACTGGAGGT
GAAGATACTTGCAAATTATCGTATTGGTAACAAGAACCTGGATTGACCAA
TAGAGAAGCCAGTGTTCTTAACGACTGAGCAATCTCCTTAACCCCGCTAA
TTTATATTTTATTAAAACAAATAAATATAAAAATCACTAAGCAGTATATA
GAAAACATGAAACCTGTGGTATCAGGAGCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_h03.g1 MSMg01no205_h03.g1 CHROMAT_FILE:
MSMg01no205_h03.g1 PHD_FILE: MSMg01no205_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:19 2005
         (287 letters)



>mm_chr14_94736494_94737180
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagtactacctttgtcaattatccacagcatttgtcaaattccttctaccagtgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagtactacctttgtcaattatccacagcatttgtcaaattccttctaccagtgaaat 260

                                                                       
Query: 61  attcctatctctaactgaaagtacaaactttaacaatatgattatgagagatgattttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcctatctctaactgaaagtacaaactttaacaatatgattatgagagatgattttaa 320

                                                                       
Query: 121 atgcatattaattactttgatattatttttttctcctcacttaagttaatctatgtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcatattaattactttgatattatttttttctcctcacttaagttaatctatgtaaaa 380

                                                                       
Query: 181 acataatcatttacagattgcaaataaatatccccaggtaactttctttcatttgaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataatcatttacagattgcaaataaatatccccaggtaactttctttcatttgaatat 440

                                                          
Query: 241 gtcttatcttttctattttctaaccatataccacagaatgtacaatt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttatcttttctattttctaaccatataccacagaatgtacaatt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)