BAC Information

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BAC

Clone NameMSMg01-206H24
Chromosome14 (Build37)
Map Location 95,833,637 - 95,834,306
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206H24.T7 (MSMg01no206_h24.b1)MSMg01-206H24.TJ (MSMg01no206_h24.g1)
ACCAG390088AG390089
length725723
length of high quality
(start - end)
673 (53 - 725)290 (81 - 370)
definitionCHROMAT_FILE: MSMg01no206_h24.b1 PHD_FILE: MSMg01no206_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:42 2005CHROMAT_FILE: MSMg01no206_h24.g1 PHD_FILE: MSMg01no206_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATTTATATGAAACATAGATGTAGCTGTTCATTGGGAA
TCTAAATATGCAGAATTTAACAATGTGATTCATGTAGTTTTGTTGCTAAA
ATTGTAAGATAAAGTATTCCTAACTTTCTATCGTAAGGACCTAGCATTCG
GTTGTAATGCATTTATTATCTTTAGAACTATCTACACATAGTTTATAAAT
TCTTGGCAGTACAATTTTAAAGCAAAAGTAATATGAAAATTATAAAACAC
TCTACATCTTAATGTGTTGAATTGGAATATATAATTATATAAAGAAGAGA
ACTGAATAAGTCATTTGGAAAAGATTTTGAAGACTTACATCACTCTTTAT
GAATTTAATAGACAATGCTTCTATCCAAACTTTATGATATACCAATAAGA
AGACACATTATTATTTACTTAGGTTTTTACGGAATACTAAATTGCAGAGC
CCTCACAAAAGAGCTTAGTCACTGTTTCATCCTCTCTGTGACCCAGAACA
TAACAACAGCTTGTGCAGCATAAAAGGGCAAAAAAGGATAAACATCCTGT
GCAATTATATAAGAGCAAATGAACCATAGCTGATCAGCATTATGATGAGA
TGTGTCTTGAGAGAATTATTTAGTCAGTAAGTCATTTAGAATGATGTGCA
CAGGGTAAATTCATTGGGCATATGG
NCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTGACAAAATTGTAA
AATCTAAACAAAATCGATCAATACCTTGACAGATAACACTTACCAATACT
AGATGAAAACCAGGTAAACAGTTCTCATGTGATTTCTTTGGCTCTATTCT
TTACCACTGTTGTATGCTTTGTCATTTTACGGTTTTATGTTTGTTTTGTT
TTGTTTTATTCTATTTTACTTTATTCTTATTCTTTAAATGCCTGGTTTTT
TTTTAAGGAGAGACAAAATGTAGGTGGATTTGGGTGGAATAGTAGGTAGG
AAGAATCTCAGAGTAGTTCTTGGAGATCAACCCTACCTCAGAATACATTG
TATCAATATATTTATATTTTATGCCCCCACCATAGCAAAAATAAATGAAG
AATATAGAAACAAAATGAATATAGAAATATATCTATTAATGTTTAAGACT
GAAGTTGAGATTTTAAATTTTTGAAAAATATGTTTTAATAATCCAGGAGG
TAAAATTTTAAATTCTGGATGTTTTAAGCGATAACACATCTTTGAATGTC
AAAATAGTAACATGTTTTATTATTCCCCACATTTCTTCTTCTATGTTATT
TAGTTAAGTTTTATAATAATTAATGGATCGCCTTCTCCAACCCTTTTTAT
TTTCCCACCCCACCTGTGTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_h24.b1 MSMg01no206_h24.b1 CHROMAT_FILE:
MSMg01no206_h24.b1 PHD_FILE: MSMg01no206_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:42 2005
         (673 letters)



>mm_chr14_95833434_95834506
          Length = 1073

 Score = 1265 bits (654), Expect = 0.0
 Identities = 666/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatttatatgaaacatagatgtagctgttcattgggaatctaaatatgcagaa 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ggaattctatttagatgaaacatagatgtagctgttcattgggaatctaaatatgcagaa 814

                                                                       
Query: 64  tttaacaatgtgattcatgtagttttgttgctaaaattgtaagataaagtattcctaact 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tttaacaatgtgatttatgtagttttgttgctaaaattgtaagataaagtattcctaact 754

                                                                       
Query: 124 ttctatcgtaaggacctagcattcggttgtaatgcatttattatctttagaactatctac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttctatcgtaaggacctagcattcggttgtaatgcatttattatctttagaactatctac 694

                                                                       
Query: 184 acatagtttataaattcttggcagtacaattttaaagcaaaagtaatatgaaaattataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acatagtttataaattcttggcagtacaattttaaagcaaaagtaatatgaaaattataa 634

                                                                       
Query: 244 aacactctacatcttaatgtgttgaattggaatatataattatataaagaagagaactga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aacactctacatcttaatgtgttgaattggaatatataattatataaagaagagaactga 574

                                                                       
Query: 304 ataagtcatttggaaaagattttgaagacttacatcactctttatgaatttaatagacaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ataagtcatttggaaaagattttgaagacttacatcactctttatgaatttaatagacaa 514

                                                                       
Query: 364 tgcttctatccaaactttatgatataccaataagaagacacattattatttacttaggtt 423
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgcttctatttaaactttatgatataccaataagaagacacattattatttacttaggtt 454

                                                                       
Query: 424 tttacggaatactaaattgcagagccctcacaaaagagcttagtcactgtttcatcctct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttacggaatactaaattgcagagccctcacaaaagagcttagtcactgtttcatcctct 394

                                                                       
Query: 484 ctgtgacccagaacataacaacagcttgtgcagcataaaagggcaaaaaaggataaacat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgtgacccagaacataacaacagcttgtgcagcataaaagggcaaaaaaggataaacat 334

                                                                       
Query: 544 cctgtgcaattatataagagcaaatgaaccatagctgatcagcattatgatgagatgtgt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cctgtgcaattatataagagcaaatgaaccatagctgatcagcattatgatgagatgtgt 274

                                                                       
Query: 604 cttgagagaattatttagtcagtaagtcatttagaatgatgtgcacagggtaaattcatt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cttgagagaattatttagtcagtaagtcatttagaatgatgtgcacagggtaaattcatt 214

                     
Query: 664 gggcatatgg 673
           ||||||||||
Sbjct: 213 gggcatatgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)