Query= MSMg01no206_o07.b1 MSMg01no206_o07.b1 CHROMAT_FILE:
MSMg01no206_o07.b1 PHD_FILE: MSMg01no206_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:13 2005
(530 letters)
>mm_chr14_102326198_102327128
Length = 931
Score = 922 bits (477), Expect = 0.0
Identities = 513/529 (96%), Gaps = 9/529 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcttttccaacagcttcaatcatttttttgtggtgaattaaaccaagtataca 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttttccaacagcttcaatcaattttttgtggtgaattaaaccaagtataca 263
Query: 64 cttctttaccagggtgctatcttctggattctgttaaat-aagcaagcatacaaagatag 122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 cttctttaccagggtgctatcttctggattctgttaaattaagcaagcatacaaagatag 323
Query: 123 aggcaaggacacacactattggcaatggtgaaaaaaaaaaaaaaaaaaaaaaaccaaagc 182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 aggcaaggacacacactattggcaatggtgaaaaaaaaaaaaaaaa-------ccaaagc 376
Query: 183 agaaaatttaaagcacctcatccacaaaacacaatattattcttaaaggtgcacctagtt 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agaaaatttaaaccacctcatccacaaaacacaatattattcttaaaggtgcacctagtt 436
Query: 243 aatagcggcacagcagttagaatgctgtacaagtattaaaaggtgcacggtgcactgtgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatagcggcacagcagttagaatgctgtacaagtattaaaaggtgcacggtgcactgtgt 496
Query: 303 gcagtcagcacctcaggagataaggaagaaagggtccagtactcttgtgctttcgggatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcagtcagcacctcaggagataaggaagaaagggtccagtactcttgtgctttcgggatg 556
Query: 363 gagtgcatgccgcacgttttttcctcatttaggcaagcacaccaaatttaaaataactcc 422
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gagtgcatgctgtatgttttttcctcatttaggcaagcacaccaaatttaaaataactcc 616
Query: 423 tctcccgtgtgtgagggttgtctggcctgttctttgcctggtgttggcttcggcacttga 482
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 617 tctcccgtgtgtgagggttgtctggtctgttctttgcctggtgttggcttcggcacttga 676
Query: 483 gcagccatggatctggagttgtcgattcctttttttcttttaa-taaaa 530
||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 677 gcagccatggatctggagttggcgattcctttttttcttttaaataaaa 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_o07.g1 MSMg01no206_o07.g1 CHROMAT_FILE:
MSMg01no206_o07.g1 PHD_FILE: MSMg01no206_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:13 2005
(616 letters)
>mm_chr14_102349382_102350396
Length = 1015
Score = 1019 bits (527), Expect = 0.0
Identities = 566/579 (97%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 39 ggggtgctccgccagaatccaaatcataaattacaggtcaggctagccatgggagaggaa 98
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 ggggtgctctgccagaatccaaatcataaattacaggtcaggctagccatgggagaggaa 956
Query: 99 aaataagagttatttccttctcactattctgcccattccctcacagctgaggtgccctta 158
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 955 aaacaagagttatttccttctcactattctgcccattccctcacagctgaggtgctctta 896
Query: 159 gttttattcactaacaaaataataaagcatatgtaagaaaactggagcttattattaatt 218
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gttttatccactaacaaaataataaagcatatgtaagaaaactggagcttattattaatt 836
Query: 219 tatataaattaaaaaaaaaaacacgagttagcatcatgtctacttccttatcgcaactgt 278
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tatataaatt-aaaaaaaaaacacgagttagcatcatgtctacttccttatcgcaactgt 777
Query: 279 acagttttcttcagaggttgaaataccttttggccactgtattcagatttccctttcata 338
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 acagctttcttcagaggttgaaataccttttggccactgtattcagatttccctttcata 717
Query: 339 tcacctgcattccctctgtccctatgaactatgcataataaaaaaagaaaaaaaccaggt 398
| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 716 ttaactgcattccctctgtccctatgagctatgcataataaaaaaag-aaaaaaccaggt 658
Query: 399 tgtagtcgttatgtcacgaacaaatggaaacaaaaaaaaaatattctcaaatcctcaccc 458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 657 tgtagtcgttatgtcacgaacaaatggaaac-aaaaaaaaatattctcaaatcctcatcc 599
Query: 459 ctggttctagaaactggctgttctctcacgctcttccagtggttgacatcattctgttgg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ctggttctagaaactggctgttctctcacgctcttccagtggttgacatcattctgttgg 539
Query: 519 gacacacaatactctggagtcaataagatgggctctgtcatatgtagctggtatttggca 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gacacacaatactctggagtcaataagatgggctctgtcatatgtagctggtatttggca 479
Query: 579 caaa-aaaagacaaatttcagcaagagaatattgaggta 616
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 caaagaaaagacaaatttcagcaagagaatattgaggta 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
