BAC Information

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BAC

Clone NameMSMg01-207J23
Chromosome14 (Build37)
Map Location 102,789,920 - 102,790,303
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207J23.T7 (MSMg01no207_j23.b1)MSMg01-207J23.TJ (MSMg01no207_j23.g1)
ACCAG390793AG390794
length1,1861,207
length of high quality
(start - end)
312 (472 - 783)385 (72 - 456)
definitionCHROMAT_FILE: MSMg01no207_j23.b1 PHD_FILE: MSMg01no207_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:47 2005CHROMAT_FILE: MSMg01no207_j23.g1 PHD_FILE: MSMg01no207_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCAACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGAGAGAAGCCGCAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGAT
AAGCAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAA
TGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGCA
ACAACTTTTTTCTCAACACCCACAAATAGTATAAAATATCTTGAAGTAAC
TCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGA
AGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCA
TGGATTGGCAGGATCAACATTGTAAAAATGGTTATCTTACCAAAAGCAAT
CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG
AATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGG
ATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGNAATCACCAT
GCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACAGCATGGT
ACTGGTATAGAAACAGACCAGTAGACCAATGGAATAGAATTGAAGACCCA
GAAATGAACCCACACCCCTATGGTCACTTGATCTTTGACAAGGGAGTTAA
AAACCATCCGGTGGAAGAAAAGACAGCATTTTCAACAATGGTGGCTGGCA
CAACTGGGGTGTTATCCTGGAAAAAAAAAGGCCAATTGGACCCCAACTAA
ACCCCCTTGGACCCAAGGCCCAAATCCAAAGGGGGATCAAAAAAACTTTC
CCCAAAAAACCCGAACACCTCGGAAAACTTATTAATGGAAAAAAAGGGTG
TGAATAACACCCTTGTACAAAAAGGTGTTCTTGGGC
NNNNGAATGACGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTAGGCGCTAACAGGTCCTCAGTGTGCC
TGAATTTCTAGGACATATCCCTTGCCGCCCCACAAGAAGATACAACAGGG
GTAATTTTTAGATTTCCAGGGTGAAATGGGGGCTCAGTTGTGATTTTTGT
ATTGAAAACTTGGAAATAGGGAAAGATGTTATCCAGTGGCAGAAATGGAT
TTGACTTACCCTGCTCAAGGGCCAGGTTGTGTTTCCCCTTCTGTTTTATA
TGTAATTCTATGAGGTGAATATTTTATACTACTATGGAGGAGACAAGAGG
CACACAGAAATATTAAGTTATGTGTTCAAGGTTGCACATCAAAGATTTAT
CTGTCTTTTGTACGATGTTTTCATTGGAAAATATTTTATAAAGTGAAAAA
GTTTATTGTAACTGCCCTCTAAAAATTAATCAATTTCTGGAGATTTGTTT
TTCTACTTAATAAAAAAGGAAAGGGTAAGGGCTCAAGCCCATTGGTTAGG
CCTTGAGTAGCATGGGCAAAGCCCTGGTTTCAATCCCTAGACCCATTCAA
GAAATAAAGTGATACGCTATGGTTAATGGAAAAAGTTAACTCCTGAAGAG
AAAAAAAACCTGATAAAAATAAAATTAGATCGGTGACCTAAATATATTTT
CTGAAGTTCTTTGTGTTTCAGATAGCATTTTTATAATATATAATGAATTT
TTTACTATATATTTGAACCCATCTAAGAATATTTGAAATGTATTATTATT
GATTTTATAATGTGATCTTAATGTCTAATTGTCTGCCGTACTGCTTTTCC
CTTAATATGATGTTCTATTTTTTAATTCTCTGCTTTTTCTTTTTGTTGCT
CATATTTTGTTTTGCATTTTTTCTATTTTGCTTTACTTCTTATTCTCTTT
TTCTTCTTTTCTTCTTCTATTTCTTATATTTTTTTCTTTTTTTTCTCATT
TCATTTTTTTTTCTCTTCTTTTCTCTTCTTTTTTTATTTATTATTTTAAA
CTTTTTCTATTTCCTTTTTTTTCTCCTACTTTCCTCTTTATTTTTTCATT
TCTTATTCTTTTTTTATCTCTTCTATATTCCTTTTCTATTTTCTACTTTT
TTCCTCTTCTGACTTATTTACTTCACTACTTCTTTCTTCTTTTTTATCCT
ATTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_j23.g1 MSMg01no207_j23.g1 CHROMAT_FILE:
MSMg01no207_j23.g1 PHD_FILE: MSMg01no207_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:47 2005
         (385 letters)



>mm_chr14_102789720_102790504
          Length = 785

 Score =  704 bits (364), Expect = 0.0
 Identities = 379/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaggcgctaacaggtcctcagtgtgcctgaatttctaggacatatcccttgccgcccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 584 actaggcgctaacaggtcctcagtgtgcctgaatttctaggacatatcccttgctgtccc 525

                                                                       
Query: 61  acaagaagatacaacaggggtaatttttagatttccagggtgaaatgggggctcagttgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 524 acaagaagatacaacaggggtaatttttagatttccagggtgaaatgggggcacagttgt 465

                                                                       
Query: 121 gatttttgtattgaaaacttggaaatagggaaagatgttatccagtggcagaaatggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gatttttgtattgaaaacttggaaatagggaaagatgttatccagtggcagaaatggatt 405

                                                                       
Query: 181 tgacttaccctgctcaagggccaggttgtgtttccccttctgttttatatgtaattctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgacttaccctgctcaagggccaggttgtgtttccccttctgttttatatgtaattctat 345

                                                                       
Query: 241 gaggtgaatattttatactactatggaggagacaagaggcacacagaaatattaagttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaggtgaatattttatactactatggaggagacaagaggcacacagaaatattaagttat 285

                                                                       
Query: 301 gtgttcaaggttgcacatcaaagatttatctgtcttttgtacgatgttttcattggaaaa 360
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtgttcaaggtagcatatcaaagatttatctgtcttttgtacgatgttttcattggaaaa 225

                                   
Query: 361 tattttataaagtgaaaaagttta 384
           ||||||||||||||||||||||||
Sbjct: 224 tattttataaagtgaaaaagttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)