BAC Information

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BAC

Clone NameMSMg01-209L13
Chromosome14 (Build37)
Map Location 113,605,059 - 113,605,346
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209L13.T7 (MSMg01no209_l13.b1)MSMg01-209L13.TJ (MSMg01no209_l13.g1)
ACCAG392136AG392137
length779704
length of high quality
(start - end)
65 (289 - 353)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no209_l13.b1 PHD_FILE: MSMg01no209_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:57 2005CHROMAT_FILE: MSMg01no209_l13.g1 PHD_FILE: MSMg01no209_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCTCTTCTTTTCCTATCTTTTCTTCCCCNCCCNNNCCNNCCCCGCC
NCCCNNNCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGTACCAATACCGAATGGCAGGGGAA
GCACCTAGAAAAAATGTTCAACATCCTTAATCATCAGGCCCCATGCAAAC
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGTTGGCATGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGACTGGCGGTTCTTCAAAAAATTGGACATAGTAATACCGGATGATCCAG
CAATACCTCTCCTAGGCATATATCCATAATATGCCCCCACTGCCCAGAAG
GACACATGCTCCACTATATTCATAGCATCCTTATTTACAATAGCCAGAAG
CTGGAAAAAACCTAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACTCAATGGAGTACTACTCAACTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
AGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGCAAAGTG
GACATTAGCCCCAAATCTATGATACTCTAGATATAAGATACAATTTGCTT
ATCACATGAATCTCAAGAAGCATGAAGAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAAGTACAAAGCTATGAGAA
AACGCTTACTATAGAATTTCAGTTAAATAAAATGTTTGAAAGAAGAATAT
ATGAACTTATTACCAAAGAGAAGTCATTGTTATGAAACAAGTTCCTCCTA
GAAAAATATAATTGATATATATGTTCATAAATATGAATATATACATGTAT
ATACATATGTATATATATGTATATATACATATAGAGAAAGCTGAGATTTC
TTTCATGAGTGTGTGTGTCTCTGTGTTTGTGTATGTGCATGTATGTAGAT
GAGTGTGTGATTCTTTTTTTCCCCGNTCCTCCCCCAAAGTATAGAAATTC
CATCTCTTATTGCATCCATCTTCAAAATTCAGGTACTTCTCACTTTAGAG
AAAAGTCCAACAAATTAAATTCGAAACAGAACTCGCACAGTGCATGCCTG
CACTAGGTCATGGATGCAGAGTCTGTGAAATGATATTAAGTGAACAACTG
CAAAAGATGTGTGGATATGTCTCCAAATGCCCAATTGAAATGAAACACCT
GTACGAACAGTTTCTTCCAGAGAATGCCATTTGTAATGGCTATGCCTTCC
TAAGCAGCACGTGTTTATTTTAATGTCATCACCCATTTCGATAGAATCCT
ACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_l13.g1 MSMg01no209_l13.g1 CHROMAT_FILE:
MSMg01no209_l13.g1 PHD_FILE: MSMg01no209_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:57 2005
         (284 letters)



>mm_chr14_113605009_113605692
          Length = 684

 Score =  426 bits (220), Expect = e-123
 Identities = 268/296 (90%), Gaps = 20/296 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaagtacaaagctatgagaaaacgcttactatagaatttcagttaaataaaatgtt 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 338 catgaaagtacaaagctatgagaaaacgtttactatagaatttcagttaaatgaaatgtt 279

                                                                       
Query: 61  tgaaagaagaatatatgaacttattaccaaagagaagtcattgttatgaaacaagttcct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgaaagaagaatatatgaacttaataccaaagagaagtcattgttatgaaacaagttcct 219

                                                                       
Query: 121 cctagaaaaatataattgatatatatgttcataaatatgaatatatacatgtatatacat 180
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 218 catagaaaaatataattgatacatatgttcataaatatgaatatatacatgtatatatat 159

                                                                       
Query: 181 atgtatatatat------------gtatatatacatatagagaaagctgagatttctttc 228
           || |||||||||            ||||||||||||||||||||||||||||||||||||
Sbjct: 158 atatatatatatatatatatatatgtatatatacatatagagaaagctgagatttctttc 99

                                                                   
Query: 229 atgagtgtgtgtgtctctgtgtttgtgtatgtgcatgtatgtagatgagtgtgtga 284
           |||||||||||| |||||||||        ||||||||||||||||||||||||||
Sbjct: 98  atgagtgtgtgtatctctgtgt--------gtgcatgtatgtagatgagtgtgtga 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)