BAC Information

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BAC

Clone NameMSMg01-212A10
Chromosome14 (Build37)
Map Location 69,556,348 - 69,622,595
singlet/doubletdoublet
Overlap genenone
Upstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
Downstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212A10.T7 (MSMg01no212_a10.b1)MSMg01-212A10.TJ (MSMg01no212_a10.g1)
ACCAG393533AG393534
length699704
length of high quality
(start - end)
231 (124 - 354)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no212_a10.b1 PHD_FILE: MSMg01no212_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:40 2005CHROMAT_FILE: MSMg01no212_a10.g1 PHD_FILE: MSMg01no212_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,556,348 - 69,556,578)(69,622,317 - 69,622,595)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACAGTATGCTCTCTTTGTCTATCAGCTCTACATCTACGACCATCTT
GGATGACTCAAACATCTGCCTGAGTGGTAGTGCATTGGAATATGGAGCAG
AAGACTGCCAACCTAAATGTCAAATTGGGCAGAGCAGAGACAAGGAATGA
ACCACACTTGCCTAACTAACAGCATTGATGGCCCTGGCACACTTACCAGC
ATTGAGAGAGCAATCAGCATGGCCCTCGAATTAACTGAGGGTGTTTAATA
GATGGGCGTATGCTTGTCTCTAAACCAGCAGAATGAACCTCAGGAGGATG
AAAATCTTTACCTGCTCACGACACTGACCTCTGAAGTCCTTATTGCAGTT
AGTGGCTTTCGGCCCACCGAGTCACACAAACTCATAGCCCTCACCGACTC
TCATTTATTTACTTGTGACTGGTATCTAGTCAGTTGTCAAATCTTGCCTC
TATCCATGCTGTAATACAGTCCTCCTTCCCACTCCTCCCTCCCAAGGCTA
TCAGCATCCCCTGTTTTGTGCCTTCCTCGCTCTCTTCCTGGATCTCCTAA
TACAATCTCTGGTACACTTTGATACTGTTGTCTTGCCTCACCTTATAGCA
TCATATATACTTCAGCTCAACTTTTACCTGAGTTGAATATCTTCCAATT
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCCTCTAGTTCAACGAGAAAGTATG
TAGGAAAACACGCCGGAAATGCACAGAGCCACCTAAACATTAGCTATTAT
TAGCATGCATGGAGATGATAATACTTGTCCTACTTATAAACACTGCCTGC
CTATGCAGATAAAGCACGGCGAGGCGATTTAAAAAGTTGAAAAGTGCTGA
CGTAAGAGCTTATTATTAGTATTATTATTGCCATCATTGAGTGAGTGATA
ATTAAGTTCAGTAGGGGAAAACCTAGATTTTAATTACAAGCTGCATAGAA
TCCTGTTGTTTAAATCCCCCCCTCCCCACTCAGGTTGAACAACATCAGGA
TCCCCACTTACTTTCCGATTCTGCAATAGAACTGCATCGACAATTAACAG
CCTGCTAATACTTGTGCTATTTCAGAATATCTGATCCTAGAAACAGGGAT
TTCTTTGCAGCTTATTGGCGACCCAGTGAAATGCATCCACCTGCGAGGTG
GAATGTTCTATCTGATGGGCAGCCCGCCAACAGCCCTAGCCTGAAAATTT
AGGATTGTTCAGGTGGAAAAATCATTGTGTTTATACCCCTCAAGGTCCTT
GTTTCTTGTCGACTATTTTTTGAATGCTGTCCCCCTGTTTTGCGCCCCCC
ATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_a10.b1 MSMg01no212_a10.b1 CHROMAT_FILE:
MSMg01no212_a10.b1 PHD_FILE: MSMg01no212_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:40 2005
         (231 letters)



>mm_chr14_69556148_69556778
          Length = 631

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtagtgcattggaatatggagcagaagactgccaacctaaatgtcaaattgggcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggtagtgcattggaatatggagcagaagactgccaacctaaatgtcaaattgggcaga 260

                                                                       
Query: 61  gcagagacaaggaatgaaccacacttgcctaactaacagcattgatggccctggcacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagagacaaggaatgaaccacacttgcctaactaacagcattgatggccctggcacact 320

                                                                       
Query: 121 taccagcattgagagagcaatcagcatggccctcgaattaactgagggtgtttaatagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccagcattgagagagcaatcagcatggccctcgaattaactgagggtgtttaatagat 380

                                                              
Query: 181 gggcgtatgcttgtctctaaaccagcagaatgaacctcaggaggatgaaaa 231
           ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgtatgcttgtctctaaaccagcagaatgaacctcaggaggatgaaaa 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no212_a10.g1 MSMg01no212_a10.g1 CHROMAT_FILE:
MSMg01no212_a10.g1 PHD_FILE: MSMg01no212_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:41 2005
         (282 letters)



>mm_chr14_69622115_69622796
          Length = 682

 Score =  516 bits (267), Expect = e-151
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   cctctagttcaacgagaaagtatgtaggaaaacacgccggaaatgcacagagccacctaa 62
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 481 cctctagttcaacgagaaagtatgtaggaaaacacgccggaaatgcacagggccacctaa 422

                                                                       
Query: 63  acattagctattattagcatgcatggagatgataatacttgtcctacttataaacactgc 122
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 421 acattagctattattagcatgcatgcagatgataatacttgtcctacttataaacactgc 362

                                                                       
Query: 123 ctgcctatgcagataaagcacggcgaggcgatttaaaaagttgaaaagtgctgacgtaag 182
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgcctaggcagataaagcacggcgaggcgatttaaaaagttgaaaagtgctgacgtaag 302

                                                                       
Query: 183 agcttattattagtattattattgccatcattgagtgagtgataattaagttcagtaggg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcttattattagtattattattgccatcattgagtgagtgataattaagttcagtaggg 242

                                                  
Query: 243 gaaaacctagattttaattacaagctgcatagaatcctg 281
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaacctagattttaattacaagctgcatagaatcctg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)