BAC Information

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BAC

Clone NameMSMg01-212I06
Chromosome14 (Build37)
Map Location 86,102,638 - 86,102,947
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629794, LOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212I06.T7 (MSMg01no212_i06.b1)MSMg01-212I06.TJ (MSMg01no212_i06.g1)
ACCAG393843AG393844
length713716
length of high quality
(start - end)
314 (41 - 354)280 (72 - 351)
definitionCHROMAT_FILE: MSMg01no212_i06.b1 PHD_FILE: MSMg01no212_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:18 2005CHROMAT_FILE: MSMg01no212_i06.g1 PHD_FILE: MSMg01no212_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTAAGTATATATCAGAATAGTTACATGCTTACTTGTCCTTAGCTCTGCC
ATATCAGAAAGAAATGAATGGTTATTAAAATACCACCAAGAAGAAATAAT
GGAAAATAATGAGACAGTGTGATCTATGTTATAACTTATATAGTGAAGAC
ATATTTTGCATAAGATGAATAATTTTAAATTAAGATATAATCAATTGAAA
CTAAGTTCTAAACATCAATGCTCAATATCAATATGAGAAAGAACATATTA
ATCATCCACATATTTATTGCTCAGCCCCATACAAAGTAATTTACCACATA
AATTGTTTTATTACCGACTCACCTCTTTAACCTTCATCTACAATAAATAC
ATGATTTTGAACTAATGAATATTTGAACAAGTGAAAAAATACATTTTCAA
GTTGTTCATTTGCCGATGAACTACCCAGGCAATTTCAGTTTCCTATCTCA
CTCACACTTCCGCATCCTTGGCAGGCATTTTCTATGGCTAGTAAGGAAGC
CATTTCATTTGCTCAGCTTGACCTGAGGTCTTAGTATTCCTATTTTCTGT
GGCCTTGGCCTATCATCTTTCACTGGCCTTGCCTTAAGGAGCTGCGTTCC
TTTCCTACTGCTCCTATAATCAATCAAACACACTTCGCTTATAGGAACAT
AAGTTTACTTTCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGCAGTCAAGTTCCTCTGAGACCCTGA
AATATTGGTGTGACTCAGCTCCTGTTATCCTGGGATCCTGTTGTCCTAAG
ATCCTGTACATGTTACAGTGCCTGGAAATGGTGTCTACTTTGAGGGCCAT
GGAGCTGTCTGATCAGTGATCCTAAGATCCCATGGAGAGTCCTCTGAGGA
CTGTGGGGGTGCTCGCCGACTCTGCGCCCAAGGTGACCCAGTACTGGCGC
TGACCAGAAGGGACTTTTGCCCCTGGTCAGGACGGTTTTCTGCTTCCCTA
TTGTTTTTTCACCCCCCCCCTCATTGAATTGGGACCGATGTTGTGTTCAG
CTCAACAACCGATCCTAAAACTGACTGTAGAGTCCTCTAGGGACTGTACG
GGTGTCTGCCGACTCCATGTCCCCAAGCTCCTTTTACTCTGGCTATATCT
AATCATCTTTCAAACTTTCATTCAGCGATTTTTTTTCTGCTTTTTATAGT
ACATCATCTATTACTGTTGTCTTATGCTAAGCTAACGGCGACCATTCCAT
ATTCTGATCACAACACAGATGCCAGCAGTTTGAATTACTTTGTTTATGAC
CAATTGATTGCCCTTACTCTTGAGTGTTCTAATTATTTGACCCTGTTTTT
ATCTTCCCCTTGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_i06.b1 MSMg01no212_i06.b1 CHROMAT_FILE:
MSMg01no212_i06.b1 PHD_FILE: MSMg01no212_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:18 2005
         (314 letters)



>mm_chr14_86102434_86103147
          Length = 714

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaagtatatatcagaatagttacatgcttacttgtccttagctctgccatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctttaagtatatatcagaatagttacatgcttacttgtccttagctctgccatat 455

                                                                       
Query: 65  cagaaagaaatgaatggttattaaaataccaccaagaagaaataatggaaaataatgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cagaaagaaatgaatggttattaaaataccaccaagaagaaataatggaaaataatgaga 395

                                                                       
Query: 125 cagtgtgatctatgttataacttatatagtgaagacatattttgcataagatgaataatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagtgtgatctatgttataacttatatagtgaagacatattttgcataagatgaataatt 335

                                                                       
Query: 185 ttaaattaagatataatcaattgaaactaagttctaaacatcaatgctcaatatcaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttaaattaagatataatcaattgaaactaagttctaaacatcaatgctcaatatcaatat 275

                                                                       
Query: 245 gagaaagaacatattaatcatccacatatttattgctcagccccatacaaagtaatttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gagaaagaacatattaatcatccacatatttattgctcagccccatacaaagtaatttac 215

                     
Query: 305 cacataaatt 314
           ||||||||||
Sbjct: 214 cacataaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)