BAC Information

Click to search

BAC

Clone NameMSMg01-212L20
Chromosome14 (Build37)
Map Location 21,869,415 - 21,869,662
singlet/doubletsinglet
Overlap geneAp3m1
Upstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl
Downstream geneAdk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212L20.T7 (MSMg01no212_l20.b1)MSMg01-212L20.TJ (MSMg01no212_l20.g1)
ACCAG393987AG393988
length753740
length of high quality
(start - end)
252 (49 - 300)282 (79 - 360)
definitionCHROMAT_FILE: MSMg01no212_l20.b1 PHD_FILE: MSMg01no212_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:35 2005CHROMAT_FILE: MSMg01no212_l20.g1 PHD_FILE: MSMg01no212_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCTGAAGACCAGGCTGGCCTCTAACACAAGAGTCTGCTTG
CCTCTACCACCCAAGTGCTGGGATTAAAGGCATATGCCATGACTGCTGGC
CACCAATGATCTAACATTTCCAGTCTTTTACCCTCAGCAAATCATACTGT
TCCCTACAGACTGTTTGATAAGACTTTTTTTTTCAATAATTTAGATGTGT
ATTATGTGTATTTGAGTGTGGGTTTGTGCATGTAAATGCAGGTCCATGAT
GACCAGGAGTGGACAGTGTATTCCTTGAAGCTGGAAATACAGGGGGTGGG
ATTAAAATTTGACTCNTTTCGGGACCAGGACCCTAGTTCATTTCCTAGCA
CCCATCTCAGGTAGCTCACAAACCAAAAAAAAAAAAACTTTAATTCTGTA
TGTATTTCTGTTTGTATATGTCATGTGAGTGCATTTACTTGCATAGGCCA
CAAAATTACATCAGATTCCCTGGAGTTATTGGTTGTTAATACCTGACCTT
GCCTTCTTCTTGAACATCTCCCACCCCACTTATATCAAAATAATTAATCC
CTTTTTACATGTCCTACTTTACATATATTCTACGTTCTTATGCCTTAAAA
AGGATTTAAACTTTTCCTGACCCTCCTAGTACTTTTTGATTCTTTTCTCT
TTAACTTTCATTATCTGACCTTCTTCACTTGGTGCTCCCTACCTCATATT
ATG
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTCCTTTGCCTTAAAGAAGTTTTGCAATT
TTCTGAGGTCCCATTTGTCGATTCTTGATCTTAGAGCATAAGCCATTGGT
GTTCTGTTGAGGAAATTTTGCCCATGCCCATGTGTTCAAGGTTCTTCCCC
ATTTTCTCCTCTATAAGTTGCAGTGTATCTGGGTTTATGTGGAGGTCCTT
GATCTACTTGGACTTGAGCTTTGTACCAGGAGATAAGAATGGGTTGATTT
GCACTTTCTCTAGTTGTTCTCCNAGCTGACCCACCTACATTTGTTAAAAT
GCTGTCTTTTTTTCCACTGGATGGAAAGAAATCCTTTGTCAAAAATCAGG
TGACCATAGGTGTGTGGGTTCATTTCTGAGTCTTCAATTATAAGCCATCA
ATGTTAGGAGATGTTCTTGGTCCAATGAAGGCTCGATAGATGCCCCAGTG
TATTGGAATCAAGGGCAGGTAGGTGGTAGTGCGTGCGTTTATCTTCCCCC
ATATTTATTATTTTATTTATCTTTTTTTCCGAAACTTCCGTTCTTTTTAT
TTTTCTTTTTTTTCTTTTTTTCCTTCTACATATTTTTCTTTTTCTCCACA
CTCCTATAATTTACTCCTTCTCTTTACAAATATTATCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_l20.b1 MSMg01no212_l20.b1 CHROMAT_FILE:
MSMg01no212_l20.b1 PHD_FILE: MSMg01no212_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:35 2005
         (252 letters)



>mm_chr14_21869212_21869863
          Length = 652

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgaagaccaggctggcctctaacacaagagtctgcttgcctctaccacc 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctctaacacaagagtctgcttgcctctaccacc 263

                                                                       
Query: 64  caagtgctgggattaaaggcatatgccatgactgctggccaccaatgatctaacatttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagtgctgggattaaaggcatatgccatgactgctggccaccaatgatctaacatttcc 323

                                                                       
Query: 124 agtcttttaccctcagcaaatcatactgttccctacagactgtttgataagacttttttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtcttttaccctcagcaaatcatactgttccctacagactgtttgataagacttttttt 383

                                                                       
Query: 184 ttcaataatttagatgtgtattatgtgtatttgagtgtgggtttgtgcatgtaaatgcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcaataatttagatgtgtattatgtgtatttgagtgtgggtttgtgcatgtaaatgcag 443

                   
Query: 244 gtccatga 251
           ||||||||
Sbjct: 444 gtccatga 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)