BAC Information

Click to search

BAC

Clone NameMSMg01-213K19
Chromosome14 (Build37)
Map Location 98,402,861 - 98,533,244
singlet/doubletdoublet
Overlap geneDach1
Upstream geneEG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213K19.T7 (MSMg01no213_k19.b1)MSMg01-213K19.TJ (MSMg01no213_k19.g1)
ACCAG394590AG394591
length712718
length of high quality
(start - end)
317 (43 - 359)283 (74 - 356)
definitionCHROMAT_FILE: MSMg01no213_k19.b1 PHD_FILE: MSMg01no213_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:46 2005CHROMAT_FILE: MSMg01no213_k19.g1 PHD_FILE: MSMg01no213_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,532,932 - 98,533,244)(98,402,861 - 98,403,143)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAACAGTTAGCTTCAGTTGAGCAGTCAATGTGTTCTGCATGCCTTGCT
GGTCAAGTACTCTTTTGGGTGTTAAGAGAAAATGGCAAATAAAAAGCAGT
TTCTTTTCTCTAGGATTTGCTATAGATCTCTCTCTCTCTCTCTCTCTCAA
CAAAATTAAATACATTTTATTTTTCTTATATATGTATTTAGTATTTACTT
TGTAATTTAGATATAAAGAATACATGTAAATAGCATGTACAATTAAATGT
AAAGGGACAGGTTTTGACTCACCAAGTTCTCATGAGTAAACAACTATAAC
ATGCTATAGTTTTGTAAGGAGGCATCCTCTCAAAGAAAGAAAAATAAAGA
ACCAAAGCCAAAGCAACAAACCTCCAAGCATGCCATGAACAAGTGTGGAA
ATGCAGGTAAAGTCAGGTTACCTGTCTTTTTGAGCCTAGGCTTACAGTAT
GATTACTGTAGGGGACAGTATCCAAAGGGATGCGATGGCACAAGTCCATA
CTTAACAGTAAATAAACGTTTTGTATAACTTAGACAATGAGTATTTGAAA
CAGAATGATGGAGGTGAACCATTGGAAACATCCTGACTCTAGAATAGTTC
TTTAAGTTTTTTCCACTGGTGTATTTAAAAATCACTTAACAGAACTCAAA
GCTAGTGTTTAN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTATAGCAGATCATGATTTCTGGT
CGAACCACTGGAGAAAAGATCCAAAGGTTGACAACTAATCAAACCGCTAT
AGATTTTCGTTGACACTGATACACAGTAACACTCGGCTCAGAAATTTGAG
GCAGTTACCTGTATCTGGATATATTCGATGGTGGAGGTTAAGCAAAGACA
CACTTATGAAAGAGATCAGTTCTATAGATTCCTGCTAGAGTCTCTGTAAT
TGTTAGACTTTCAGAGGTAAGGTAAATAAGTAATGGTGTGGTAGGGGTGA
TGTGTGACTCTTTGTTGCAACACCCCCACCAGCGCTTGGAGTCCTATGGG
GTGTATTGTATTGAGAGCACCACCGTCAAAAATGAATATATAAACAAATG
AATAAGAATAAGAAAGGGGTAGAAAGGGAAAAGTAAGAAAAATACTATAG
AAGTCCACCATTTTCTGTATTTAAAAAAAAGTATTCATAATTTATTTGAT
ATTACCTGACAGAATTTAAATAGTTATCTCATCCATACAGCTTTTCTAGA
AAGGAACTAAAGTATGGTATGGTTCATTAAAGTGAATATATGGTGTTTCT
AAATGAGAAAAATATTAAGTTCATTCCTTAAATTTTAATGTGTTGAAGGT
TTGATTCCCGGTTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_k19.b1 MSMg01no213_k19.b1 CHROMAT_FILE:
MSMg01no213_k19.b1 PHD_FILE: MSMg01no213_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:46 2005
         (317 letters)



>mm_chr14_98532576_98533292
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaacagttagcttcagttgagcagtcaatgtgttctgcatgccttgctggtcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaattccaacagttagcttcagttgagcagtcaatgtgttctgcatgccttgctggtcaa 610

                                                                       
Query: 65  gtactcttttgggtgttaagagaaaatggcaaataaaaagcagtttcttttctctaggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtactcttttgggtgttaagagaaaatggcaaataaaaagcagtttcttttctctaggat 550

                                                                       
Query: 125 ttgctatagatctctctctctctctctctctcaacaaaattaaatacattttatttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgctatagatctctctctctctctctctctcaacaaaattaaatacattttatttttct 490

                                                                       
Query: 185 tatatatgtatttagtatttactttgtaatttagatataaagaatacatgtaaatagcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tatatatgtatttagtatttactttgtaatttagatataaagaatacatgtaaatagcat 430

                                                                       
Query: 245 gtacaattaaatgtaaagggacaggttttgactcaccaagttctcatgagtaaacaacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtacaattaaatgtaaagggacaggttttgactcaccaagttctcatgagtaaacaacta 370

                        
Query: 305 taacatgctatag 317
           |||||||||||||
Sbjct: 369 taacatgctatag 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no213_k19.g1 MSMg01no213_k19.g1 CHROMAT_FILE:
MSMg01no213_k19.g1 PHD_FILE: MSMg01no213_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:46 2005
         (283 letters)



>mm_chr14_98402661_98403343
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctatagcagatcatgatttctggtcgaaccactggagaaaagatccaaaggttgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tttctatagcagatcatgatttctggtcgaaccactggagaaaagattcaaaggttgaca 260

                                                                       
Query: 61  actaatcaaaccgctatagattttcgttgacactgatacacagtaacactcggctcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaatcaaaccgctatagattttcgttgacactgatacacagtaacactcggctcagaa 320

                                                                       
Query: 121 atttgaggcagttacctgtatctggatatattcgatggtggaggttaagcaaagacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgaggcagttacctgtatctggatatattcgatggtggaggttaagcaaagacacac 380

                                                                       
Query: 181 ttatgaaagagatcagttctatagattcctgctagagtctctgtaattgttagactttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgaaagagatcagttctatagattcctgctagagtctctgtaattgttagactttca 440

                                                      
Query: 241 gaggtaaggtaaataagtaatggtgtggtaggggtgatgtgtg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtaaggtaaataagtaatggtgtggtaggggtgatgtgtg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)