BAC Information

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BAC

Clone NameMSMg01-214D07
Chromosome14 (Build37)
Map Location 68,413,331 - 68,413,575
singlet/doubletsinglet
Overlap geneDock5
Upstream geneLOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214D07.T7 (MSMg01no214_d07.b1)MSMg01-214D07.TJ (MSMg01no214_d07.g1)
ACCAG394935AG394936
length799724
length of high quality
(start - end)
71 (46 - 116)235 (127 - 361)
definitionCHROMAT_FILE: MSMg01no214_d07.b1 PHD_FILE: MSMg01no214_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:27 2005CHROMAT_FILE: MSMg01no214_d07.g1 PHD_FILE: MSMg01no214_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTAAAAATCTTTTTGTTGTTGTTGTTTTATGATGTATATG
TGTATGTGTGTATGGTATTTCTACGAATATGTGTGTGTGAGTGNCCTNNN
NCTCCNTATTCTTNNNTCCCCCCCCCACAACCCATAAACCTCCCTCCACC
AACCCTCTTATTCAAACCCATACCCATACCCATTACCCCCCCCATTTCCC
CCCCTATATTAACACATCCCATAATTACCCCAACCAACCTATCCCCCACC
CCACCCAACACCCCCCCACCTCTTTTTTTTAAAACCCCCCATACCCCCCC
ACCCCCCCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCAAATAATAAATA
GAAAATATATACACCCCTTTTTCCCCCCCAAAAAAAAAAAAAAAAAAATC
GGCTGGTTGCCTAACCCCCCACATCCCCATAATCTAACCACCATCATCCC
CCACCCATTACACAAAATTACACTTCCCACTAACAAATACACTATATCCA
TAACTCCTTACCCCCCTTAAAACAACCAAAAATATTTTATCTCCCACACT
CCCATAAACATCCCCCTCACCAACACACCACAAACCACATATCCCCCCAA
CAATTTATAAACAACCCATATACTTACACAACATAACATCCACTACAATC
TCACCCACCATATATTATATCCCTTTCAAAACCCCCTCAAAAACAAACCA
TCACCACCTAACAACCTCCCATCTCTCTCTCTCCTTCCCACCCCAACCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACGCCTGCACCAAACAGCACTGC
CCAGTGTTCTTTTTTCCATTGGACCGTACACACAGAGTCCGAGAAGCAAA
CAATTAGATCTTCTTTTCAGCAATCCTGGTGGAAAAATGTCTAAATTTAA
CTAAGTGGCAAAAAATGGTTTCAGAACCGTTTGTTTGCTTGCTTGTTTGT
TTTTCAGCCTGGCCGTTCTATGTCTGACTTGCTCCTCCTTTGGACAAGAC
CAGCCATTTTTACTGCCTCGTGCTCTGTGCACTTGTGGTATTCCTTACTG
CAGTTCTTGTTTTATTTGCCCCCCCCCCCCTTCCTGCAAAATTATAGCTG
CCCTGCTTGTGTGTCAGNCCCCTTCTGAACCGACTAGTCAGGAGGATTTG
AACTAAGATCTGTTAAAAAAACTGATGACTTGAGAATATTGGCTGGTCTG
ACAGTGGACCCAGCTTTGATGCCCAGCATCTATGTGGCAGCCCACAGCCA
TCTGTAACTCTAGTTCTAGGGGATCAGACACCAGCTTTTGGCCTCCATTG
GCACCAGCTGTTCAGGCTGTATATTGATATACATGCAGGTCAAACACCCA
TACACATGAAATAAGAAGGTTTTAGTTAAAATGATTGTTACCCAGTTTTG
AAGTTATAGAGATGTATTCTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_d07.g1 MSMg01no214_d07.g1 CHROMAT_FILE:
MSMg01no214_d07.g1 PHD_FILE: MSMg01no214_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:27 2005
         (235 letters)



>mm_chr14_68413250_68413884
          Length = 635

 Score =  393 bits (203), Expect = e-114
 Identities = 229/245 (93%), Gaps = 12/245 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacacacagagtccgagaagcaaacaattagatcttcttttcagcaatcctggtggaaaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacacacagagtcagagaagcaaacaattagatcttcttttcagcaatcctggtggaaaa 267

                                                                       
Query: 61  atgtctaaatttaactaagtggcaaaaaatggtttcagaacc------------gtttgt 108
           |||||||||||||||||||||||||||||||||||||||| |            ||||||
Sbjct: 266 atgtctaaatttaactaagtggcaaaaaatggtttcagaatcgtttgtttgtttgtttgt 207

                                                                       
Query: 109 ttgcttgcttgtttgtttttcagcctggccgttctatgtctgacttgctcctcctttgga 168
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttgtttgtttgtttgtttttcagcctggccgttctatgtctgacttgctcctcctttgga 147

                                                                       
Query: 169 caagaccagccatttttactgcctcgtgctctgtgcacttgtggtattccttactgcagt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 caagaccagccatttttactgcctcgtgctctgtgcacttgtggtattccttactgcagt 87

                
Query: 229 tcttg 233
           |||||
Sbjct: 86  tcttg 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)