BAC Information

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BAC

Clone NameMSMg01-214O14
Chromosome14 (Build37)
Map Location 88,122,589 - 88,122,870
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214O14.T7 (MSMg01no214_o14.b1)MSMg01-214O14.TJ (MSMg01no214_o14.g1)
ACCAG395360AG395361
length728707
length of high quality
(start - end)
201 (46 - 246)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no214_o14.b1 PHD_FILE: MSMg01no214_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:23 2005CHROMAT_FILE: MSMg01no214_o14.g1 PHD_FILE: MSMg01no214_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAATTTCTTTATGAAAACACTTATTGCTATGGACTTTTCTTTT
AGCACCGCTTTCATTGTGTCCCACAAATTTGGGTATGTTGTGCACTTATT
TTCATTGAATTCCATAAAGCCTTTAATTTCTTTATTTCTTTTTTAAAAAA
ATTTTCTTTATTTCTTTCTCCACCCATTGATTATTGAGTATAGAGATGTT
CACCTTATGCTTCTGTATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGAACTTTAACCCCTTCATAAATCCTTT
CACTTAATATTGAAACAATTAATAAATATTACCTATTCCGACATTTTCCT
TGACCTTCCACCTATTTCACTCTTTCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCGGGAGCCCATTTTTCACTACT
GTCCAAAAAGAACAGCTGCTTAAACGCAATATGTGCCTATAAAATAAGAA
CAGCTCTCATAAAGACAAGGGAAGATGCTCTGCTTCATTTGTGTAGCATA
GGTAAAAGCAAACTGACTACTGATTTTCTAATGCCTGTGCTCTATAGGAA
GGATGGATCCATTTCATGCTTAAAATGCATCTGAACAGAAGGGGTGTGGG
AATTACCCTAACGTTTACTTGGCTTACTCATACTGTCTTCCTAAATGAAG
AAATGAAATGTGGNATCCATCGANAACANAANCCTTGTGAAAAGNTGGNC
ACTCTAATAACTCGCCCCCCACACTTAAGTACAAAATCCGGTGGGGGTAG
GCAAGCTAGCTGGGAACTGCAACTTATAGAGCATTCTCTTGATGAGTCTC
CAGGGTTCTGAATGCAGCTAGAGAGTTACCCACGCTGGGTAACCGAAAGA
GAGCAAGGATGAACAGAAGGTAATGATAGTGATAGGATGAATTTTGCACA
TCATCATCCCTCCCATTTGTGTCCATTTTTCTTGTATAGCCTCTACTGTT
TCTATTCTTTTTTTTTAACCTTTATCGAATATCTTCTAATTATTTATTTC
CCACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_o14.g1 MSMg01no214_o14.g1 CHROMAT_FILE:
MSMg01no214_o14.g1 PHD_FILE: MSMg01no214_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:23 2005
         (282 letters)



>mm_chr14_88122389_88123070
          Length = 682

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgggagcccatttttcactactgtccaaaaagaacagctgcttaaacgcaatatgtgc 60
           |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||
Sbjct: 482 atcgggagcccatttttcactactgtccaaaaagaacagctgcagaaaggcaatatgtgc 423

                                                                       
Query: 61  ctataaaataagaacagctctcataaagacaagggaagatgctctgcttcatttgtgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctataaaataagaacagctctcataaagacaagggaagatgctctgcttcatttgtgtag 363

                                                                       
Query: 121 cataggtaaaagcaaactgactactgattttctaatgcctgtgctctataggaaggatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cataggtaaaagcaaactgactactgattttctaatgcctgtgctctataggaaggatgg 303

                                                                       
Query: 181 atccatttcatgcttaaaatgcatctgaacagaaggggtgtgggaattaccctaacgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atccatttcatgcttaaaatgcatctgaacagaaggggtgtgggaattaccctaacgttt 243

                                                     
Query: 241 acttggcttactcatactgtcttcctaaatgaagaaatgaaa 282
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 acttggcatactcatactgtcttcctaaatgaagaaatgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)