BAC Information

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BAC

Clone NameMSMg01-215F03
Chromosome14 (Build37)
Map Location 74,787,331 - 74,787,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
Downstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215F03.T7 (MSMg01no215_f03.b1)MSMg01-215F03.TJ (MSMg01no215_f03.g1)
ACCAG395611AG395612
length718725
length of high quality
(start - end)
---490 (125 - 614)
definitionCHROMAT_FILE: MSMg01no215_f03.b1 PHD_FILE: MSMg01no215_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:57 2005CHROMAT_FILE: MSMg01no215_f03.g1 PHD_FILE: MSMg01no215_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAG
ATCCTCCGCGGATGAGCATCTAACGGGAGTCTGTGCAGGTAATACTTAAA
AAAGTGCTTTTGACCCGCTAGCAAGACAGCACTCTTATAACACCGAGCAT
ATGTGCTGAGAAGACCGGTGAAGAAGATTCGCTTCACTAAACACCTGTGA
ATAAGGATGCTTAGCATACGTGCATGCGGTGCACAGATATGCAAAGCACA
GAGACTGGAAGCGGATCCTGCTGACTAGGCACCTTTCTGTGACAGAGGAC
ACCAGATATGGCGATAGGCACTTGTGAAGTATTTTCACAGAAAAGCATGA
AGAAGAATTTGGTCCCAAGCCTCATTTGAAAAGCGCGAGGATCAGCATGC
TGGACTCATTTAAATTCCCTGTCGCTCAGCAGCTTATCTGCTTATGATGA
ATATACTTGACACAAGCTACTACTAAGTCACTGACTTTGAACATCTCTCT
TAGGTTAAGATGATGTTCACATCACATGTAGAACGCGCTTTGAATGTGTT
GAGGTTCCCATTTATTGCTATCTTGTTTTCCCCTGTGTTATATAGATAGA
TACTATCCCTGTGGTTTGTCGTTATAAATGAACCTCTCTACCTCACGCCT
GATTTCTGCCGTCCAAAACATATCATCTGGAAAGCACACGGATAAGCTGA
TTTCATAGGGTGACATAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCCGTTCCTTACTGGGTTCTATGTT
ATACTTGGTAGGGGCTTGTGACCTGGAGGATGTGTCTGCCAAGTGAATTA
GATTAAGTGACTCCTGGGAAGAATTCGAATGGGAAATAAGCACTATGGCT
ATGGAGAAATGTTTATCCAGACAGACATTAAAGGAATTAGACATGGTTTC
GAAGACAAAGCTTGTCAGGATGGGTCAACTAGATGAAGAAGCTGGTGAGC
AGGGCTGAAGAGCCTAGGCACATATTGTTTGAAACCCCAGCCTTTTTGTC
TTGATGTTTGAATGATTTAACAATTGAGGACATATTTTTTTTTAATTTAA
AAACAGAATTTCTCAGAGGAAGTAAAGAAAGTTAGCTCAACTACTATCCC
CTCTGGCAATCAGAGTAGATCTTCCCCAAGGAATGGTCAAGAATTCCTTG
GAAGGAATTGCCAGTTTCATACCCAGGAACCCTGTATAAGTAGAGGGTTT
GGAAAGAAGAGGCTAAAAGTATTTAAGGAGATATATGCAGGGTCTATACA
GTTCTAGCTGGAGCAAAACCTTCTGATCATCTGACCTTACGGAGCATGAA
ACTGAAGCAACAAGAGGGAAAAGTACTATATTCTGGGTGTCATGGATGAG
AAAGAGAGCTGAGATGAAAACATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_f03.g1 MSMg01no215_f03.g1 CHROMAT_FILE:
MSMg01no215_f03.g1 PHD_FILE: MSMg01no215_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:57 2005
         (490 letters)



>mm_chr14_74787331_74788220
          Length = 890

 Score =  884 bits (457), Expect = 0.0
 Identities = 457/457 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaggatgtgtctgccaagtgaattagattaagtgactcctgggaagaattcgaatggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaggatgtgtctgccaagtgaattagattaagtgactcctgggaagaattcgaatggga 398

                                                                       
Query: 61  aataagcactatggctatggagaaatgtttatccagacagacattaaaggaattagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aataagcactatggctatggagaaatgtttatccagacagacattaaaggaattagacat 338

                                                                       
Query: 121 ggtttcgaagacaaagcttgtcaggatgggtcaactagatgaagaagctggtgagcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggtttcgaagacaaagcttgtcaggatgggtcaactagatgaagaagctggtgagcaggg 278

                                                                       
Query: 181 ctgaagagcctaggcacatattgtttgaaaccccagcctttttgtcttgatgtttgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctgaagagcctaggcacatattgtttgaaaccccagcctttttgtcttgatgtttgaatg 218

                                                                       
Query: 241 atttaacaattgaggacatatttttttttaatttaaaaacagaatttctcagaggaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atttaacaattgaggacatatttttttttaatttaaaaacagaatttctcagaggaagta 158

                                                                       
Query: 301 aagaaagttagctcaactactatcccctctggcaatcagagtagatcttccccaaggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aagaaagttagctcaactactatcccctctggcaatcagagtagatcttccccaaggaat 98

                                                                       
Query: 361 ggtcaagaattccttggaaggaattgccagtttcatacccaggaaccctgtataagtaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  ggtcaagaattccttggaaggaattgccagtttcatacccaggaaccctgtataagtaga 38

                                                
Query: 421 gggtttggaaagaagaggctaaaagtatttaaggaga 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  gggtttggaaagaagaggctaaaagtatttaaggaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)