BAC Information

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BAC

Clone NameMSMg01-215I02
Chromosome14 (Build37)
Map Location 107,300,601 - 107,300,844
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215I02.T7 (MSMg01no215_i02.b1)MSMg01-215I02.TJ (MSMg01no215_i02.g1)
ACCAG395731AG395732
length730735
length of high quality
(start - end)
524 (70 - 593)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no215_i02.b1 PHD_FILE: MSMg01no215_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:12 2005CHROMAT_FILE: MSMg01no215_i02.g1 PHD_FILE: MSMg01no215_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXTANATGCCAGAAGACCGCGGAAT
TCTATATCTTCACTTGAAGGCTGCTAGTGGAAGACTGACTTCTAGGAATC
TAAGACAAGTGTCTTAAAGCCCAAGCCCATATTGACACACCATCGCCAGC
AAGGCCTCCAAATAGTGCCACTCCCTGGGATAAGCATAGACAAACCATCA
CAGCAAGTCAATATGGCAGTGTCTGAGAAAATTTAGAATTGATGAACTTT
AAGACCCAACTATACTAATCTTTGTTATATACACAAAGCACACTCTGTCC
TAGACAGGAACACTTGTTTAGCTATGTTTATTGCAGTTTTATTCATAATA
GTAAGAAACAAGAGACAACTAGATGTCCTTCAACCAAAGAATGAATTAAA
AATTGTGTTAGATTTACATAATAAAAAATTATCAGTTTAAAAAATGATAT
CATCAAATATTCAGACAAATAGCTCAACTAGAAAATTCATCCTGAGTATG
ATAACCCAGACTCAGAAAGACTAATATGATCTGTACATACTTCTTCTTTT
TTTGTTGTTTTTTTGTTGTTGTTGTTTTTGTTTTTTGATCCCCACATTTT
ATTTTTTATTTTTTGATTTTTTTTCCATTTTTATTAGGCATTTAGCTCAT
TTACATTTCCAATGCTATACCAAAATTCCCTTTTTTACCCCCCCCCTTCT
TCTTATTTTTTCTCCCCCCCCCCTTTTTTT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGTAAAGGCCACTAGTCAGAG
ATCAGTCATCAGGCACACATCGACACACACAGGTCACTAAAGGTAGGCAT
ACATGCAATCCTGCACCCAGGCTACACAGAGATGTGCATACAGGCCTTCA
GAGAGACACAGATAGGAAGTCTGTAAGTGATGAGAGCAAAGGCACACACA
CACACACATACACACACACACACACACACACACACACACACACAGAGGGA
GAGAGAGAGAGAGAGAGAGAGAGAGAACATTTTGATGGAAGTCATTATAA
AACAGTTCATTTCCTATTATATTCCACCTCACACCACTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCCCATGCTGACATGGATGTGGAGAAAAAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGCTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTACATAGCAGTCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAATATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_i02.g1 MSMg01no215_i02.g1 CHROMAT_FILE:
MSMg01no215_i02.g1 PHD_FILE: MSMg01no215_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:12 2005
         (287 letters)



>mm_chr14_107300401_107301087
          Length = 687

 Score =  441 bits (228), Expect = e-128
 Identities = 242/250 (96%), Gaps = 6/250 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggtaaaggccactagtcagagatcagtcatcaggcacacatcgacacacacaggtca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acaggtaaaggccactagtcagagatcagtcatcaggcacacattgacacacacaggtca 260

                                                                       
Query: 61  ctaaaggtaggcatacatgcaatcctgcacccaggctacacagagatgtgcatacaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaaggtaggcatacatgcaatcctgcacccaggctacacagagatgtgcatacaggcc 320

                                                                       
Query: 121 ttcagagagacacagataggaagtctgtaagtgatgagagcaaaggcacacacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagagagacacagataggaagtctgtaagtgatgagagcaaaggcacacacacacaca 380

                                                                       
Query: 181 catacacacacacacacacacacacacacacacacacagagggagagagagagagagaga 240
           ||      ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ca------cacacacacacacacacacacacacacacagagagagagagagagagagaga 434

                     
Query: 241 gagagagaga 250
           ||||||||||
Sbjct: 435 gagagagaga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)