BAC Information

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BAC

Clone NameMSMg01-215L09
Chromosome14 (Build37)
Map Location 69,241,080 - 69,241,426
singlet/doubletsinglet
Overlap geneAdam28
Upstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1
Downstream geneLOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215L09.T7 (MSMg01no215_l09.b1)MSMg01-215L09.TJ (MSMg01no215_l09.g1)
ACCAG395861AG395862
length777827
length of high quality
(start - end)
230 (118 - 347)347 (128 - 474)
definitionCHROMAT_FILE: MSMg01no215_l09.b1 PHD_FILE: MSMg01no215_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:27 2005CHROMAT_FILE: MSMg01no215_l09.g1 PHD_FILE: MSMg01no215_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTC
CAAAAAATATTCTGTAGTGCAAAACACAGGGACCAATACACTGCAGAAGC
TTCACAATTTCTACCGAAAAGAGAAAGAAGGAACTCAGAAATATAGGCAA
GAAATAGTTGTCTGTTTCTTTAACCCCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTATTTCT
CTCTCTCTCTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCTCTCTCTCTCTCTCACTCT
CTCTCTTTTTTTTCTCCCCCCCCCCCTCCTTAGATGTTTTTTAAGAATAA
AAGTTTGTTTTCCCCCCGCAAGAAAAAACCATAACCTGTACTTGTCAGGT
TCCTTCGCTACATCTTATTCAATTTATTATAGGTAAATATCTGTTATTTT
TTTATTTCTCCTCATGCCATGACTAATCTATACTCACATTTGCCTATTTT
GTTCGCGTGTCTCGGGTTACTTCCCCTCTTTATATCTATTGTACCTCTCC
CATGCCTTATTACGCATATTTGGCAGTTAATTAAGCCTATTTCACCCTAA
AAATATTGCTTAATAGTAAACAGCGGTCTAATATTTTAAATTTCGCTCTC
CTTTCTGACAATTATAATAACATCTTTACTCGTTTCCTTATCTCACATCA
AACTTTACTATCACAATCAATATATTN
TTTTTCCCTTCATTTCTTTTTTCCACCTTCCATTTTTTTTTAATNCCTCC
CCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGGAGCAATGAGAAGGAGG
AACACACAGCTAAAGATACTGCTTTGCCCTTTATTACCCTAGCCAAAGCT
GTTTTTTATGGCAATGAATAATTGAAGAAGAATTTTAAAGTCCAAGAATA
AAGACGTATCAAACAATTGAGAGTGCAGTAATCTAATATCAGTCCTGCTT
CTTTGAATTGTAGGATGTTTAAAATCTAGGGAAAGTACAAGGATGCTTCT
GGTTGAGGAAAGGTAGCAATGAAGGTACTTGATGGTGGGTATATGAATGA
TACTTTCCAAAGTATTAGAACCAGTAACTCAGAAGTTAGGGATTTTGATT
ATGTTTCCTTTGATTATACATGAACCTATTTGTTTTCAAGTATACATCTG
TTTTGTTGTAATAAGGAATTATCCAAATGATCCAGGACATATAATCACAA
ATATTTTATATCATCTTGACTATCAAAACATGAAATTCATTAAAAATTTT
ACTAGATTACAAATCAACATTATTTTAATTTTTTCTTGAAAACATAAAAA
TATACTCTTTTACAAACTTTTAGCTTTTTCTATACTTATTGTTGAAATAA
TCAATCATAAGGTTTCATCTAAAATGTTTTGGCCATGTGTAACAAAAAAG
TTAATTTTATCACATGGAATGGCACGCAATTTTTAATCTGTCAGGTGTTT
TTGGTAACAACATCTATTTTTGTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_l09.g1 MSMg01no215_l09.g1 CHROMAT_FILE:
MSMg01no215_l09.g1 PHD_FILE: MSMg01no215_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:27 2005
         (347 letters)



>mm_chr14_69240880_69241626
          Length = 747

 Score =  625 bits (323), Expect = 0.0
 Identities = 341/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaggagcaatgagaaggaggaacacacagctaaagatactgctttgccctttattac 60
           ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 547 tgtaaggagcaacaagaaggaggaacacacagctaaagatattgctttgccctttattac 488

                                                                       
Query: 61  cctagccaaagctgttttttatggcaatgaataattgaagaagaattttaaagtccaaga 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctagccaaagctggtttttatggcaatgaataattgaagaagaattttaaagtccaaga 428

                                                                       
Query: 121 ataaagacgtatcaaacaattgagagtgcagtaatctaatatcagtcctgcttctttgaa 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ataaagatgtatcaaacaattgagagtgcagtaatctaatatcagtcctgcttctttgaa 368

                                                                       
Query: 181 ttgtaggatgtttaaaatctagggaaagtacaaggatgcttctggttgaggaaaggtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttgtaggatgtttaaaatctagggaaagtacaaggatgcttctggttgaggaaaggtagc 308

                                                                       
Query: 241 aatgaaggtacttgatggtgggtatatgaatgatactttccaaagtattagaaccagtaa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatgaaggtgcttgatggtgggtatatgaatgatactttccaaagtattagaaccagtaa 248

                                                          
Query: 301 ctcagaagttagggattttgattatgtttcctttgattatacatgaa 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctcagaagttagggattttgattatgtttcctttgattatacatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)