BAC Information

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BAC

Clone NameMSMg01-216B17
Chromosome14 (Build37)
Map Location 69,241,147 - 69,241,426
singlet/doubletsinglet
Overlap geneAdam28
Upstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1
Downstream geneLOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216B17.T7 (MSMg01no216_b17.b1)MSMg01-216B17.TJ (MSMg01no216_b17.g1)
ACCAG396110AG396111
length737737
length of high quality
(start - end)
280 (124 - 403)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no216_b17.b1 PHD_FILE: MSMg01no216_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:58 2005CHROMAT_FILE: MSMg01no216_b17.g1 PHD_FILE: MSMg01no216_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTCTTACAAAATTCTGTAGTGCAAAACACAGGGACCAATACACT
GCAGAAGCTTCACATATAAACCCATGAAAAGAGAAAGAAGGAACTCAGAA
ATATAGGCAAGAAATAGTTGTCTGTTTCTTTAACCCCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTATTTCTCTCTCTCTCTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGAAATTTTT
CCAGGATAAAAGCCGCTAATCAAAAGGGGAAGTGCCCCTCACCTGTAGTT
GTCTGTTGGCTGGGTAAGAAAAGTCCTTTAGTAAAGGAGAAATTTGGTAA
ACTGAGTTTCCTTGCCATGCTAACCAGTCTATAACGCCCTTTAAAGTTTA
TCAAGGAACTCCACCTTAAGGTTATGGCCAATAAAGTCTAAGAGAAAACT
GTTGTTTTTTGTTATTTCTAGAACAACTTGTGAGTCTGACAGTGTCGATT
TTTATCTTGCTCCTTTCACCAAGTTTAAAAGTCTTACTGCAAATATGCAT
TGCAGTGTATTCTATAGAAATTTCAGAGAAGCTGTGN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTAAGGAGCAATGAGAAGGAGGAAC
ACACAGCTAAAGATACTGCTTTGCCCTTTATTACCCTAGCCAAAGCTGTT
TTTTATGGCAATGAATAATTGAAGAAGAATTTTAAAGTCCAAGAATAAAG
ACGTATCAAACAATTGAGAGTGCAGTAATCTAATATCAGTCCTGCTTCTT
TGAATTGTAGGATGTTTAAAATCTAGGGAAAGTACAAGGATGCTTCTGGT
TGAGGAAAGGTAGCAATGATGGTACTTGATGGTGGGTATATGAATGATAC
TTTCCTAAAGTTTATAACCNGNAACTAGCCCTTATGGATTTTGATTATGT
TTCCTTTGATTATACATGAAAATAAAAAAAATCAGTATACGTCTGGTTTG
TTGTAATAAGGAATTATCCAAATGATCCAGGAAATATAATCACAAATATT
TATATCATCTTGACTATCAAAACATGAAATTCATTAAAAATTTTACAAGT
TTATAAATCAACATTATTTATTTTTCTTGAAAACAAAAATATACTCTTTA
CAAATTTTTGCTTTTTTACTTTTGTTAATTATCAATCAAAGGCTTATCTA
ATGTTTGCCAGTGTATAAGAGCTATTTATCATTGAGTGCCGCAGCTTACA
GTCAGGGTTTGGGGATTCAGCCTGGGCACAGGTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_b17.g1 MSMg01no216_b17.g1 CHROMAT_FILE:
MSMg01no216_b17.g1 PHD_FILE: MSMg01no216_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:58 2005
         (280 letters)



>mm_chr14_69240947_69241626
          Length = 680

 Score =  487 bits (252), Expect = e-142
 Identities = 273/280 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaggagcaatgagaaggaggaacacacagctaaagatactgctttgccctttattac 60
           ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 tgtaaggagcaacaagaaggaggaacacacagctaaagatattgctttgccctttattac 421

                                                                       
Query: 61  cctagccaaagctgttttttatggcaatgaataattgaagaagaattttaaagtccaaga 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cctagccaaagctggtttttatggcaatgaataattgaagaagaattttaaagtccaaga 361

                                                                       
Query: 121 ataaagacgtatcaaacaattgagagtgcagtaatctaatatcagtcctgcttctttgaa 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ataaagatgtatcaaacaattgagagtgcagtaatctaatatcagtcctgcttctttgaa 301

                                                                       
Query: 181 ttgtaggatgtttaaaatctagggaaagtacaaggatgcttctggttgaggaaaggtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttgtaggatgtttaaaatctagggaaagtacaaggatgcttctggttgaggaaaggtagc 241

                                                   
Query: 241 aatgatggtacttgatggtgggtatatgaatgatactttc 280
           ||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 240 aatgaaggtgcttgatggtgggtatatgaatgatactttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)