BAC Information

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BAC

Clone NameMSMg01-216D19
Chromosome14 (Build37)
Map Location 23,767,325 - 23,767,553
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneZfp503, EG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216D19.T7 (MSMg01no216_d19.b1)MSMg01-216D19.TJ (MSMg01no216_d19.g1)
ACCAG396189AG396190
length744715
length of high quality
(start - end)
231 (126 - 356)54 (230 - 283)
definitionCHROMAT_FILE: MSMg01no216_d19.b1 PHD_FILE: MSMg01no216_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:09 2005CHROMAT_FILE: MSMg01no216_d19.g1 PHD_FILE: MSMg01no216_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAATGTTCAACTCTCTTGTAAATGTTTGCTTGCCCCCACGAGA
ACTTGGAAATTAAAACATATTTCATATAATCCCTTTAGATTTTTCTTGTT
TTCATCTCTTGGCTTTTATTTTATTTCACATCTTTTAATTGTGTTAGGAA
GTCTCTGTATAGCGTGGGAAAATACCTTGTTAGTTGGAAAATCCCCTTTC
TGCAATGGGCAGAGCATTTGAGAAGCTCCTATTGATACTGGGACAATGAT
GTCTTCTACTTTGATTTTTTTTAAGTCCAAACAAATGGCCAAGAGGATGA
GGTCTTCNACTCANGTTGCNATTGCGNNGCCCGGCACAGTGTATAACTCT
TCACTACTCTTGACTCTGGCTAAAATACTNTGCAACCAAGCTTTGTTCAG
ACATTTTCCATGCAGGCTCTGTGCCTTTTGTCTCATTGCTCCCACCCCCC
CCCCCCGCCTCGTCCTGCATCGGCTGCAGCTCTGGCAGCTGCTGCTGCAC
ATTGTACAAGAGAGAGCCGAGCATTCACCCTTTTCCTGGCAGTGCTGACC
TTTGTGGGGTCTGGACCTGCTAGAGAGAGTGTGCCTCCTGGTTTCAGTCC
CTTTTATTTCTCTTTCAATGTCTCACCAGTTCAGCCTAACTCTGAAGTGG
TGCCTGACAAGAGAGCTCATAGAAGCGAAGTATCTGATGGGAAG
GGCGGCGCCTGGTTCCAAAGAAGGGGNGANNNANAGAAGTTCCCAAAAAA
GGGGNGNNNGGAANNNANNNAGANANNNNNNNNNANAANANTTTTAACCG
ACAAACAGGGAGANAGAGANANANNNNGGGGGNNAGGNANGGAGANNNGA
AGNNNNNANAANNANNNNAANNNNNAANGANAAAAAAGNAAAGGGAANNN
NCNGGAAGAGAGGGNNNAAAAGATTTTGTTAGTAGANNGAATTGGNATTG
GTTCTAATTGAGTANAANAAATGTGTAATGTGTGGGAGTTTTTGTATTTT
GAAGAAGACAGNANGAAGGGAAGAAAGAGTTATGGGTGGGGTTTCCCACC
GGNCCCCCAGGGAGGGAGGGGNNANNNAGGNNNGGNAGGGGGANGAAGGN
NAAAANNNAAAGGGGNNNGGNANNNGAGGAGANNNAGAAGNAGAAAGNAG
GAGGAGAGAAAANGAGGAGGGAAAGAGGGGNAAAAAAGGANGAAGGAGGG
AGGAAGGGAGGGAAAAGNGAGAAAAAAAGAGAGAAAAAGAGGGAGGAAAG
AGGGAAGAAAAGGAGAAAAGAGAAGGGGGGAGAAAAGAAAGGGAGAGGGA
GGNAAAAAAAAAAGAAGATTTTTTTTTTTTTGTTTAGAAATAATTTAGAG
TTGTGGGGTTTATATTAAAGAAAGTGGTATATAGAAGTTAAGGTTTTGAA
GTTATGTCCTAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_d19.b1 MSMg01no216_d19.b1 CHROMAT_FILE:
MSMg01no216_d19.b1 PHD_FILE: MSMg01no216_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:09 2005
         (231 letters)



>mm_chr14_23767125_23767755
          Length = 631

 Score =  371 bits (192), Expect = e-107
 Identities = 219/236 (92%), Gaps = 14/236 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatccctttagatttttcttgttttcatctcttggcttttattttatttcacatcttt 60
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 201 ataatccctttagatttttcttgttctcatctcttggctttcattttatttcacatcttt 260

                                                                       
Query: 61  taattgtgttaggaagtctctgtatagcgtgggaaaataccttgttagttggaaaatccc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 taattgtgttaggaagtctctgtatagcgtgggaaaataacttgttagttggaaaatccc 320

                                                                       
Query: 121 ctttctgcaatgggcagagcatttgagaagctcctattgatactgggacaatgatgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttctgcaatgggcagagcatttgagaagctcctattgatactgggacaatgatgtctt 380

                                                                   
Query: 181 ctactttgatttttttt-------aagtccaaacaaatggccaagaggatgaggtc 229
           ||||||||||              ||||||||||||||||||||||||||||||||
Sbjct: 381 ctactttgat-------gaaagaaaagtccaaacaaatggccaagaggatgaggtc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)