BAC Information

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BAC

Clone NameMSMg01-217H08
Chromosome14 (Build37)
Map Location 120,111,564 - 120,111,805
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, LOC619601, EG621324
Downstream geneLOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217H08.T7 (MSMg01no217_h08.b1)MSMg01-217H08.TJ (MSMg01no217_h08.g1)
ACCAG396979AG396980
length703761
length of high quality
(start - end)
---243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no217_h08.b1 PHD_FILE: MSMg01no217_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:01 2005CHROMAT_FILE: MSMg01no217_h08.g1 PHD_FILE: MSMg01no217_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAATTTGGGCGCTAATAGATCCTATAGTTCCGAAAAAGGGAANNNNGG
NNTTTTCAGAAAAAANGANNAANGGGGAAANAGAANNNAGAAGNGAAGAG
TTTTTACCCAANAAAGGGGGAGAGAGNNANGANNGGAAGAGGAAGGGAAG
AAGGGAAGAANNAGAAGGAGGAGAANAGGGAAAGGAAGGAGAAAGGGGAA
GAGAANAAGAGGAGGAGATTTTTTNGAAGAGAAATTAAAGAGGGTAAGAG
NAAGTATTGGTGAGGAGAAAGGAAAGNATTTTTTTTTTATAAAAGAAGAG
GGAGNNAGAGAGGAAAATTTTTAATGGTTTCCCCCCCCCCCCCCCCCCGA
AGGGAATNGAGAAANGNAGAGGGGGGGGGGCCCAAAACCCNCACGNCAAA
AAGCGGGGCCCGCCGGGGGNACNAACCCAACAAACCCCACGAGAAACCAA
CCATCGAACCACAGATCATTTCCCCTCTCCCCCATGCGTTAGTTCTCAAT
ATATCGTGCCCGCTATCTTTCTTGTTTCTTTTTGGATTTGCCTTTTCGTG
TCCCACCTCCTCATAGTTATATCCTTTGTTTTCACATACCCTTTCCGGTT
TTTTTTTTCCCCGCCGGAATTCTACCATTCCTCTTTTTTTTTCTTTACGT
GATCTCCGCTCTAATCTTTTATTTTTACGCCGCGCGCTCTCTCTTTCCTT
TTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGAAACGGCATTTGTACATAAATA
TTTAGGAAGGGTAATAATCTTGACCCGTATTTCACGTCATTCATTCTCTC
TTTATATGCACAATGCTTGGTAAACTTTTGCCTCTTTGAGTCAAATGCTT
TGTTCTCCTCTTCTGAGTCTATCCGTTGCCTCTGTGCCTTCAGATTTGTA
GGGCCACAATGATTCTCTGAGATATGCTGAATTATCAGAATGCCAGCTGT
AAACTGGGTAAGTGGGGGAGAGCGGTTTTGACCCTAGAGGCTGACCACGA
CTCTCAGAGAAAGATTTTTTGTTGCACCCCACACCCCTCTGGCAGCTGCA
GCACCTGGAGTGTACACCTGATACAAAAGAGACTTCATAATAGCAAATGT
TGTTCATTAAGCTAAAGTGCCTGGGGTGAATTCCTGGCGGAAACCTCATT
AAAGGCCAATGGAGAAAGAAGCCCTCTCCCTGATATTTTAAAATAAACGA
GGGGCTTATTTCTTTTGTCTTGATCATGATGCAGCCTTGCATCAGTTGAT
GGATTTTTTTTCTCATGTCTTCTTGTAGTACCCAATGAAAATAATTCCAT
AAAAGCACCTTATTAGTGTTATTTGAAAGAGAAAATCATTGACACACTGT
CATAGGCTGCTTTACGCCCTCCCCATTCATTTTTATAAGACCACAAATTA
AATTACCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_h08.g1 MSMg01no217_h08.g1 CHROMAT_FILE:
MSMg01no217_h08.g1 PHD_FILE: MSMg01no217_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:01 2005
         (243 letters)



>mm_chr14_120111364_120112005
          Length = 642

 Score =  424 bits (219), Expect = e-123
 Identities = 237/245 (96%), Gaps = 5/245 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaaacggcatttgtacataaatatttaggaagggtaataatcttg--acccgtattt 58
           ||||||||||||||||||||||||||||||||||||||||||||||||  |   ||||||
Sbjct: 201 agtgaaacggcatttgtacataaatatttaggaagggtaataatcttgaaa---gtattt 257

                                                                       
Query: 59  cacgtcattcattctctctttatatgcacaatgcttggtaaacttttgcctctttgagtc 118
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 258 cacgtcatttattctctctttatatgcacaatgcttggtaaaattttgcctctttgagtc 317

                                                                       
Query: 119 aaatgctttgttctcctcttctgagtctatccgttgcctctgtgccttcagatttgtagg 178
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 aaatgctttgttctcctcttctgagtctatcctttgcctctgtgccttcagatttgtagg 377

                                                                       
Query: 179 gccacaatgattctctgagatatgctgaattatcagaatgccagctgtaaactgggtaag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gccacaatgattctctgagatatgctgaattatcagaatgccagctgtaaactgggtaag 437

                
Query: 239 tgggg 243
           |||||
Sbjct: 438 tgggg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space:   148122
Effective search space used:   148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)