BAC Information

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BAC

Clone NameMSMg01-217H10
Chromosome14 (Build37)
Map Location 25,732,634 - 25,733,113
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217H10.T7 (MSMg01no217_h10.b1)MSMg01-217H10.TJ (MSMg01no217_h10.g1)
ACCAG396982AG396983
length703762
length of high quality
(start - end)
313 (47 - 359)480 (127 - 606)
definitionCHROMAT_FILE: MSMg01no217_h10.b1 PHD_FILE: MSMg01no217_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:01 2005CHROMAT_FILE: MSMg01no217_h10.g1 PHD_FILE: MSMg01no217_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATTTGATTCAAATAAGTTTAGGAAGAAGGTTTTAAGAGACA
GTCTCAGTTGGTCTGCTATAAACTGTAATAAAGTTGGAATCAAGAATAGA
ACGTGCCTTCTCCTCATATAGTAAGTAAAGGCTGCATAAAAAGAAATAGA
ATGAGCTTCTTTCATAATTACATAAAAAAAGAGAAATAGACTTGGGACAA
ATTTGTGTTCAAGGAAAAACATTTAGGTCCAAGGATAAAGTCATAGGTAT
GCACTATGATAAGGCAAGGTCGTGAAAAAACTATTGCTTTAAACTTATAA
TGAATGATTNNATAGAATGACCCAGNGCCTGACCTCATATCAACATCCTT
CTGTAACTTTCATTTTATGCCACACAAAATATATGAGGCAATTTTCTAAG
GATTTTTTTTTCTAAGAAGGTATAAAAAGACCAGAGAAAATATATAAAAT
TGACGGTTGAATGGACTAGCTTGGGGAGCTCTGCCCCATCCTTCCATCCA
TCCATCCATCCATCCATCCATCCATCCATCTAAATGTTGTGTCTTTTTTT
CTATATGTATGTTTGCAGGCCGTGTTTATCTCTTCTCCTTTTCTTGCTTC
TTCTTTTCCCTCTATCCTTTTTTTTTCCCCCCTCTCATCTCTCTTTTCTT
TTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATAGCTCAAGAGGAAGCATCTGGA
ATCCTTCCCTCCAGGTGTTCTGACCGGGGCTTAGACTACCTAATCCTCCC
CACTTCCCCTTCACATGCTGTTAAGCATGAGAGAAGGAACGTCCATGGAG
GTCTGAGGACCTCTGCCAGGCTTGCACAGGGCCATGATGACTATGACCTT
TATGCCCCGTGCTCTTCTAGAAATTGGGGTACCTATGGAAAAGCGAGGTC
AGCCCCTCACTGTCCATCTGGAGGTCAGCTGTATTGCAGGAACCCAATCC
ACCCTATAGTGGCAGAAAGAAGCCCAGAAGTATCCATTTCACCTCCAGGA
CTAGGGCTGGGAGATGCTCTATTGAGAATAGAGCCCAAGCTGTGGGTGGG
ATGGAGTAAGCAGTCAGTAGGTCCCTGTTGTAGTAGAGAGAGGGTGCAGG
CTTCCCCAGAGCCAAGAAGAAGGGACAAAAAGTCAACTGGTAGAGCCCTG
GGCTGTGTGAGACAGGAGAAGACCATAAGAACACAGTACCCCTCATATCA
TGGTAGCTTAGGCACAGACCTCAACACCTTTGTAGAAAGCACTCCTCCTC
CTCCACAGCATTCCTCTCTTGACTGCCCTGGGAAACCAGAGGGGATAGAC
AGATGTTCATTTATCCCTTTGGCTGCTGTATTGAGATCCCACATAGATTA
TCTTCAAACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_h10.g1 MSMg01no217_h10.g1 CHROMAT_FILE:
MSMg01no217_h10.g1 PHD_FILE: MSMg01no217_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:02 2005
         (480 letters)



>mm_chr14_25732434_25733313
          Length = 880

 Score =  851 bits (440), Expect = 0.0
 Identities = 470/480 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggcttagactacctaatcctccccacttccccttcacatgctgttaagcatgagagaag 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggcttagactatctaatcctccccacttccccttcacatgctgttaagcatgagagaag 621

                                                                       
Query: 61  gaacgtccatggaggtctgaggacctctgccaggcttgcacagggccatgatgactatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 gaacgtccatggaggtctgaggacctctgccaggcttgcacagggccatgatgactaaga 561

                                                                       
Query: 121 cctttatgccccgtgctcttctagaaattggggtacctatggaaaagcgaggtcagcccc 180
           ||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct: 560 cctttatgccctgtgctcttctagaaattggggtacccatggagaagtgaggtcagcccc 501

                                                                       
Query: 181 tcactgtccatctggaggtcagctgtattgcaggaacccaatccaccctatagtggcaga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 tcactgtccatctggaggtcagctgtatttcaggaacccaatccaccctatagtggcaga 441

                                                                       
Query: 241 aagaagcccagaagtatccatttcacctccaggactagggctgggagatgctctattgag 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 aagaagcccagaagtatccatttcacctccaggactagggctgagagatgctctattgag 381

                                                                       
Query: 301 aatagagcccaagctgtgggtgggatggagtaagcagtcagtaggtccctgttgtagtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatagagcccaagctgtgggtgggatggagtaagcagtcagtaggtccctgttgtagtag 321

                                                                       
Query: 361 agagagggtgcaggcttccccagagccaagaagaagggacaaaaagtcaactggtagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agagagggtgcaggcttccccagagccaagaagaagggacaaaaagtcaactggtagagc 261

                                                                       
Query: 421 cctgggctgtgtgagacaggagaagaccataagaacacagtacccctcatatcatggtag 480
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 260 cctgggctgtgtgagacaggaggagaccataagaacacagtacccctcaaatcatggtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)