BAC Information

Click to search

BAC

Clone NameMSMg01-217P09
Chromosome14 (Build37)
Map Location 50,772,283 - 50,772,569
singlet/doubletsinglet
Overlap genenone
Upstream geneNat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729
Downstream geneOlfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217P09.T7 (MSMg01no217_p09.b1)MSMg01-217P09.TJ (MSMg01no217_p09.g1)
ACCAG397303AG397304
length771722
length of high quality
(start - end)		315 (46 - 360)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no217_p09.b1 PHD_FILE: MSMg01no217_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:50 2005CHROMAT_FILE: MSMg01no217_p09.g1 PHD_FILE: MSMg01no217_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGGTTTCTCCGTCTATGATAATGGAGAGTTTTGCTAGGTATAG
TAGTCTGGGATGGCATTTGTGTTCTCTTAGAGTCTGTATGACATCTGCCC
ATGATCTTCTGGCTTTCACAGTCTCTGGTGAGAAATCTGGTGTAATTGTG
ATAGGTATGCCTTTATATGTTACTTGACCTTTTTCCCTTACTGCTTTTAA
TAGTCTATCTTTGTTTTGTGCATTTGGTGTTTTAATTATTATGTACAGGA
GGAATTTCTTTTTTGGTCCTTACTATTTGGAGTTTTGTAGGCTTCTTGTA
TGTTCGTTTGCATTTCNTTTCCTTAGGCTTNGGAAAGTTTTCTTCTATAA
TTTTTGTTGAAGATATTTATCCGCCCCAAATAAAAAAAAAAAATTTTCTC
TTCTCATCGATACCTATTATCCCTTAGGCTTGGCTCTTCTCTGTAGTGTC
CTTGGATTTCTCTGCATGTCTTTGGCCTTAGGACCCTTCATGCATTTTTT
TACTTCTTCTTCTGATTGTTTGTGCCCCCTGTCTTTTTTTGCTTATTCCC
GTCCTTCCATGTTCATCCTCCTTTCCCTTTTTTCTTGTTTCCCTGCCCGC
TTATGTTTTGCTCTCTCGTGTTTCTTTTGCTCCCCCCCTTTATCACTTTT
TCCTTACCTCCCCCTTTTTTGTCTCTTCTTTCTTTCACCCCTCTCCTTTT
TTTTTTCTCCCTTTCCCTCCC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTGCCTCTCTGATATGTGTTATAA
CAGGTGAGATATTCTTGACAACTATGCTTTCAGTGTGTCCAGTTGCATAG
TGTATTTAACTATTACATTGCACCTCAGAGAGGATTTTAAAAAGAAGAAA
ATATATGCAGAAGCAGGAAGCTGATGTGAAGATATTCATGTCTGTACTTT
AGCATTCTTGGGATAATCTGTGAGACTTTGCGCAACGTTCTGAAGTATTG
CTGGGAAAAGTAGGAAAATTTATGACTACTTTTTAAAAATCCATCGTGAA
ACTTTTTTCNGTCACTCACCCCAAACCAACCAAGCATGTAAGCATTTGAA
TCAAAAATGAGAAGGAAACGACAAAGAAAAAAAAGAGGGAGGGAGGGAGG
GACCTTTCTCCTCTTTCCTTTTTTTTCCCCCCCTTTTTCTCTTCTTTTCT
TTTCCTCTCCCCTTCTTTCTTTCTTTCTTTCTTCCTTTTTCCCCTTCTCC
CTTTTTTTTCTTTTTTTCTCCTCTCCTTTTCCCCCTTTTTTTTTTTCTTC
TCCTTTTCCCCCTCCTTTTTTTTTTTTTTCCCCTTTCTCCTCTTTTTTTT
TTTTCTCTTTTTTCCTTTCCCTTTTNCTTCCCCCTTTCCCCTCTCCCTCC
CTCTTTTCTCCCCCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_p09.g1 MSMg01no217_p09.g1 CHROMAT_FILE:
MSMg01no217_p09.g1 PHD_FILE: MSMg01no217_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:50 2005
         (287 letters)



>mm_chr14_50772083_50772770
          Length = 688

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgcctctctgatatgtgttataacaggtgagatattcttgac-aactatgctttca 59
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 487 actttgcctctctgatatgtgttataacaggtgagatattcttgacaaaatatgctttca 428

                                                                       
Query: 60  gtgtgtccagttgcatagtgtatttaactattacattgcacctcagagaggattttaaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgtgtccagttgcatagtgtatttaactattacattgcacctcagagaggattttaaaa 368

                                                                       
Query: 120 agaagaaaatatatgcagaagcaggaagctgatgtgaagatattcatgtctgtactttag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agaagaaaatatatgcagaagcaggaagctgatgtgaagatattcatgtctgtactttag 308

                                                                       
Query: 180 cattcttgggataatctgtgagactttgcgcaacgttctgaagtattgctgggaaaagta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cattcttgggataatctgtgagactttgcgcaacgttctgaagtattgctgggaaaagta 248

                                                          
Query: 240 ggaaaatttatgactactttttaaaaatccatcgtgaaacttttttc 286
           ||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggaaaaaacatgactactttttaaaaatccatcgtgaaacttttttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |