BAC Information

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BAC

Clone NameMSMg01-218H13
Chromosome14 (Build37)
Map Location 79,717,410 - 79,717,642
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik
Downstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218H13.T7 (MSMg01no218_h13.b1)MSMg01-218H13.TJ (MSMg01no218_h13.g1)
ACCAG397630AG397631
length826708
length of high quality
(start - end)
272 (47 - 318)232 (125 - 356)
definitionCHROMAT_FILE: MSMg01no218_h13.b1 PHD_FILE: MSMg01no218_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:30 2005CHROMAT_FILE: MSMg01no218_h13.g1 PHD_FILE: MSMg01no218_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAAGTTTCTGGGTAACGAACACAGGGTTTTTTTTTTTTTTAAG
ATTTATTTATGCATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAA
GAGGACATCAGAACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGC
TGGGAATTGAACTCAGGACCTCTGGTAGAGCCGTCAGTGCCCTTAACCAC
TGAGCCATCTCTCCAGCCCCCAAGAGAGTGATTTCTTTTCTTTCTTTCTG
TTTTTTTCAGAGACAGGGTTTCTTTGTGTACCTCTGTCTGTCCTGGAACT
CATTATTTTTTTATAGTTTCCAAAGACATATCCCCGTTTTTTTTTGTTAT
TTGGCTTCCTTTTTTTTTTCCCCCCCCCCATAAAAAAAAAAATACTTTTG
CGGGGGGTGGGCTGCTCGTTATTGTTCTTGAACCAATTTTCCCTTTCTTT
TCCCTTCTTTCTCCGCTCTTCCTTTTCTTTAATTCTCCCGATCCATCACT
TCTTTTCGCTTCCTTTTCTACTCCTCTGTCCTTACTTTTTGTCACCTCTT
TTTTTATCCATCCATTCTTCCTTTCATTTCTTTCTTCCCGTTTCCATTCT
CCATTTATCTCTTTTTTTCTATTCCTCTCTCCATTATTATACGCCTCTCA
TCACCTACTTTTCTTCCTTCTTTCCTATTTTCCATTCTTCCTACGAATCT
ATGCATCCTTAACACGGTTTTTTTGTGTTCCTTTACTTTCTTTCTTATTT
TCCTCCACCTACTTTCTTTTTTTTCC
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGTGGTGGGATTTGATGGAAGAAAGCA
TGAAACCTCTGGATTGACCCGGGAGGAATGCCAGAAGTTTTGGGCAAGCC
TGGCCTATAAAATACAGACCTTGTCTCGAAACAAAAAAATCCACCCCACC
CCCAAAATCAATAAATAAGATGTATACACTCACAAATTAAAACAATGTAA
AGGCCCACAGAGCTGCTGCCAGGTGGCAGCCTGTCAGCACCCCATCCTTC
TCCACTCTATTTTGTCCTCTGGTTTCCCATTAGGCACTGTTTTCAGCCGT
AAGCCTTNCTCNTGTTTCCCAACCGNCCCGCATGTCTTTCAGATTAACCC
CCCATCTCTTCCTGCCACCGAATGAAATATTCTTATAGCCGACGGGACGC
AAAACCCAGAAGCATAAAAACTTGTCTTCTATGTTGTTTAATGTCTTTAA
AAGCATGCCGATGCCCATCTGTTCTCAATCGGAAAGAAATCAGAGTTAGG
CATACAATAAAAATCCAGTATAGTGGATCGATCCCCTTGTTAACTAGTGT
TGCGGTGATGTGCAGGGTGGTGGGATAAAACAGAGAATGCTCCTGATTAC
ATGGACCAGGCTGGGAGCCAGCTCAGGAGTGGAGCATCATCTGGTACTTG
TGAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_h13.g1 MSMg01no218_h13.g1 CHROMAT_FILE:
MSMg01no218_h13.g1 PHD_FILE: MSMg01no218_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:30 2005
         (232 letters)



>mm_chr14_79717210_79717842
          Length = 633

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaatgccagaagttttgggcaagcctggcctataaaatacagaccttgtctcgaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaatgccagaagttttgggcaagcctggcctataaaatacagaccttgtctcgaaacaa 260

                                                                       
Query: 61  aaaaa-tccaccccacccccaaaatcaataaataagatgtatacactcacaaattaaaac 119
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aaaaaatccaccccacccccaaaatcaataaataagatgtatacactaacaaattaaaac 320

                                                                       
Query: 120 aatgtaaaggcccacagagctgctgccaggtggcagcctgtcagcaccccatccttctcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtaaaggcccacagagctgctgccaggtggcagcctgtcagcaccccatccttctcc 380

                                                                
Query: 180 actctattttgtcctctggtttcccattaggcactgttttcagccgtaagcct 232
           ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 381 actctattttgtcctctgggttcccattaagcactgttttcagccgtaagcct 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 633
Length adjustment: 9
Effective length of query: 223
Effective length of database: 624
Effective search space:   139152
Effective search space used:   139152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)