BAC Information

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BAC

Clone NameMSMg01-218I08
Chromosome14 (Build37)
Map Location 96,101,580 - 96,101,897
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1, LOC100043366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218I08.T7 (MSMg01no218_i08.b1)MSMg01-218I08.TJ (MSMg01no218_i08.g1)
ACCAG397659AG397660
length763734
length of high quality
(start - end)		324 (43 - 366)294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no218_i08.b1 PHD_FILE: MSMg01no218_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:33 2005CHROMAT_FILE: MSMg01no218_i08.g1 PHD_FILE: MSMg01no218_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATATCCCATTTTATTCTTCAGGTTTGAATTTACTTTTATGTCATATG
TGTATACATAATTTTATGTCTTATATTAAATTTCACATCCAGGAGTGGGA
TAATATATATTTCTCTTTCTGAAACCCAATTAACTCACCTAAAATTGTAA
ACTCCCATTGCGTGTACTTTTGCCTGTAAATAACACAATTGTATTCTTTT
TAATAGCTGAACAAAATTTCATTTGATATATTAATCAGTGTGGGTGACCT
TAGCCGAAAGGCCCAACAGTGGGGAGCTAGAAGCCAAAAGGCCACCTCCA
GTAGATAGACATGGTTCTCTGTGCCGCCCACGCCCACACTAACCCACCTT
TGAAATATTTGACCCACAACTGTTCCTGTCTAAAAGAAATGCAGGGACAA
AAATAGAGCAGAGAAGTAAGGATTAGCTGATCAGGGACAGGCCCAATCTG
TGATCCATTCCAAACACTGTCACTATTACTGATGCTGTGCTGTGCTTGCA
GACTGGAGCCTAGCATTGCTGTTTTCTGAGAGGCTCTAACCAGCAGCTGC
CTGAGACAGATAGAGATACTCACAGCCAACCGTTGGACTGAGGTTGAGCA
CTTCTATGGAAGAGTTAGGGGAAGGATTGAAGGAGCTGAACTGGATGTGC
TCTACCCTATATGCTACGATCACCACTGCACCCTTTTTTTTTTCCTCTTT
CTTTGCTAATCCT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGCTGAGCAATACCTAATAGCTGAGAAT
CACCTAAGAAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAA
AACAACCCTGAAATTCCACCTCACACCAGTCAGAATAGCTAAGATCAAAA
TTTCAGGTGACAGCAGATGCTGGCGAGGATGTAGAGAAAGAGGAACACTC
CTCCATTGCTGGTGGGATTGCAAGCTGGTACAAGCACTCTGGAAATCAGT
TTGGTGGTTCCTCAGAAAATTGTAGAAATAAAAATAGAAGAGTTCTACTC
AAAGATCCAGCATTATCTCTACTGCCCGCACACCCAGAAGATGCTCCAAC
TTGTAATAAAATAAACCATTCTCACTCTCTGTTTAGTTTTATATACCATT
TTTTTTTGGATTGGGTTGTTTGGTTTCTCTGTGGNTATCTTCTTGAATTC
TTTAAATATTTTAAATATTAGCCCTCTATCAGATGTAGGATTAATGAAGA
TTGTTTTCCCATCTGTACGTTGTTAATTTGTCCTACTAGTTACCTCCTTA
GTCCTACAGAAGTTTTGGAATTTCTTACTTACAATCTCTTGATATTAGAG
GATAACCCCTTTATTAGTTCTGGTCAAGGACTTTCCAGGCCTCTTTTCCA
ATTTTCCCATCCTTTTAAAACTCAATTGTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_i08.b1 MSMg01no218_i08.b1 CHROMAT_FILE:
MSMg01no218_i08.b1 PHD_FILE: MSMg01no218_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:33 2005
         (324 letters)



>mm_chr14_96101376_96102099
          Length = 724

 Score =  561 bits (290), Expect = e-164
 Identities = 311/318 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatcccattttattcttcaggtttgaatttacttttatgtcatatgtgtata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatcccattttattcttcaggtttgaatttacttttatgtcatatgtgtata 264

                                                                       
Query: 65  cataattttatgtcttatattaaatttcacatccaggagtgggataatatatatttctct 124
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 265 cataattttatgtcttatattaaatttcacatccagaagtgggataatgtatatttctct 324

                                                                       
Query: 125 ttctgaaacccaattaactcacctaaaattgtaaactcccattgcgtgtacttttgcctg 184
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ttctgaaatccaattaactcacctaaaattgtaaactcccattgtgtgtacttttgcctg 384

                                                                       
Query: 185 taaataacacaattgtattctttttaatagctgaacaaaatttcatttgatatattaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaataacacaattgtattctttttaatagctgaacaaaatttcatttgatatattaatc 444

                                                                       
Query: 245 agtgtgggtgaccttagccgaaaggcccaacagtggggagctagaagccaaaaggccacc 304
           |||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 445 agtgtgggtgaccttagccgaaaggcccaacagtggggagataaaagccaaaagaccacc 504

                             
Query: 305 tccagtagatagacatgg 322
           ||||||||||||||||||
Sbjct: 505 tccagtagatagacatgg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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