BAC Information

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BAC

Clone NameMSMg01-218K10
Chromosome14 (Build37)
Map Location 23,019,903 - 23,020,215
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneAdk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218K10.T7 (MSMg01no218_k10.b1)MSMg01-218K10.TJ (MSMg01no218_k10.g1)
ACCAG397745AG397746
length765723
length of high quality
(start - end)
318 (44 - 361)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no218_k10.b1 PHD_FILE: MSMg01no218_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:44 2005CHROMAT_FILE: MSMg01no218_k10.g1 PHD_FILE: MSMg01no218_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATGTGCATTCCAGTGACGAGACTCCACAGTGTCCTGTCTCATTT
GGGTGCTGGATACATAATGCTTATTTTATAGAGGAAGAAGTTGGATACTC
TAAGTAGTTAAAGGCTGGGCCTTCCAGAAGTTGGTACAGCAGAAATAACT
GCTTTTTTCTTTCTGTTTTAAGAAGATTGTTGTCCTATATTACCCACTTT
AAAAAATAAGTTTTTGCCATTTTAAAGTCTACAGCTTGGTGGCTATATGT
CCTTGTGCTTTGTGTCACATCACCTCTTTTTATGACCATTTCTTTTTGTT
TTCCCTATAATATTTTTTTTTACCCACACCCTACCGGTAACTCACCATGT
CTTCCTCCCCTTTACCCCCCACTAGCATTATGAAAGTTTCTGTATCTCTA
AACTTGATTATGCAACACAGGGTGCCTTGGATGGATGAATCACACTGCCT
ATGTCCTTTTTTTTTTTTTTTTTTAAATCTGGCTTCTTAGCACAGTACCT
GTAAGTTCTTGTCGTGTGTCATCTTGTTTCAAAATTTTTTTCTTTTTTGA
CAGAAAACTATATTCTCTTGTATTTGAACTTGTCATTTATCTTTCTTCTA
TGTCTGGCTTCTGTACTTTGTGGTTTGTTCCACTCATTGCCTGTTGTGAT
AATAAGCCTTTAATTTGTCCCTTGCATCTTTCCTTACTATTATTGTCTAT
TCTCCAAATTACCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGACTACCAAATGGCTGAGA
AGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCGTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGTGGTTCCTCAAAAAAATTGGACATAGTACTACCGGAGGATCCCAC
AGTACCTCTCTTGTTTTTATCACCCCGCACCGCTCCAACCGGTAAGAAGG
ACACATGCTCCACTATGCCCCCTAGCAAACTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGGTGCCCCTCAACAGAGGAAAGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAATAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGGTATCATCCTGAGCGAGTTAACTCAATCA
CAAATGAACTCACATGATATGTACTCACTGATAAATGTATATTGGTCCAA
GAAACTTATAATACCCCAGACATATTAAACAATCAGCGAAACCATGAAGC
TCGGGAAAAACCACAATCCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_k10.b1 MSMg01no218_k10.b1 CHROMAT_FILE:
MSMg01no218_k10.b1 PHD_FILE: MSMg01no218_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:44 2005
         (318 letters)



>mm_chr14_23019699_23020416
          Length = 718

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgatgtgcattccagtgacgagactccacagtgtcctgtctcatttgggtgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgatgtgcattccagtgacgagactccacagtgtcctgtctcatttgggtgct 264

                                                                       
Query: 65  ggatacataatgcttattttatagaggaagaagttggatactctaagtagttaaaggctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatacataatgcttattttatagaggaagaagttggatactctaagtagttaaaggctg 324

                                                                       
Query: 125 ggccttccagaagttggtacagcagaaataactgcttttttctttctgttttaagaagat 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 ggccttccagaagttggtacagcagaaataactgcttttttctttctgctttaagaagat 384

                                                                       
Query: 185 tgttgtcctatattacccactttaaaaaataagtttttgccattttaaagtctacagctt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tgttgtcctatattacccactttaaaaaataagtttttgccattttaaagcctacagctt 444

                                                                       
Query: 245 ggtggctatatgtccttgtgctttgtgtcacatcacctctttttatgaccatttcttttt 304
           ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||
Sbjct: 445 ggtggctatatgtccttgtgctttgtgtcacatcaccaccatttatgaccatttcttttt 504

                        
Query: 305 gttttccctataa 317
           |||||||||||||
Sbjct: 505 gttttccctataa 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)