BAC Information

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BAC

Clone NameMSMg01-218P18
Chromosome14 (Build37)
Map Location 96,468,799 - 96,469,140
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneKlhl1, LOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218P18.T7 (MSMg01no218_p18.b1)MSMg01-218P18.TJ (MSMg01no218_p18.g1)
ACCAG397947AG397948
length756745
length of high quality
(start - end)
244 (44 - 287)340 (382 - 721)
definitionCHROMAT_FILE: MSMg01no218_p18.b1 PHD_FILE: MSMg01no218_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:09 2005CHROMAT_FILE: MSMg01no218_p18.g1 PHD_FILE: MSMg01no218_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGTGTTTGTCAAGGTGTGTCTTTCTGTCTGTATATGTTTCTTGTTC
TTTTGCTTTGTCTCTCTTTTTTTTTTCAGTTAGATTGTCCTATTCCAGTT
TGTTTGTTTATGTTTTACTTTATTTCATTATTATTCTTAGATGTTTGTTT
ATTAGAGAGACAGAAATGGGCATGTAAGGTGATGGGAGAAAGGGAGAATA
TTGAAGGAATTTGGAGACNANAANGNNTAATTAGAANATAATGTTTAAAA
AATAATTTCAATAAAATTTTTTTTTTTGATTGTTGAACAACGTCAAGNAG
AAAATTTTTTTTAGGTGGNATCCCCAAGACAANAACCCCGAANATTTGGG
AGAGGNGNNGNNNNNANGTGTCCCCCCAAAAAAAAAAAAAATTAGCGGGG
GGGGGGGGGGGTTTTTTCCTGATGTTCCGTTTTTCTTTATTTATCTCCTT
CTAGATCATCTTTGTTTGCGATTTTATTTTTTGACAGTTTTTATCCTTTT
TTTTTCCCTTTCCTTATCTTTTACTCCCCCTTATTCTATCTCTGCATGGC
TGATTTTGTTGTTTTCTTCTATCCCTGCTGTATCGCTTTTTCACTTTTTT
TTCTTCCCCCGCCTTACCTCTCTTTTCTTTTTTCACTACCTGTTCACTCT
TATTCTTTTTCCTTTCTTTTATCTTTCATCTCCTTTTCTCCTCTTTTTTC
TTCGTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAGCCACTATGGCTCAAGATCTTCAAA
CCAAGATCCAGATAATTATCTCCAAGCCTCCAGATAAGGGTCACTGGTGA
GCCTTCCAATTCCGGATTGTAGTTCATTCCAAATATTGTCAAGTTGACAA
CCAGGAATAGCCACTACACCTGCCTACTAAGAAACCTTTGAAATAAGTAT
TCTAGCCCCAATTGCTCTAATATAGTTTTAACTAATTCAGAACCTTAAGG
TGTAAAATTAATGACACCGAAGCCCAGGCTAAAGAGAAATTTTCTCATTT
TTCTTTTATGTATTTAATCAACACCTTTATAAACAATATAAATAATGCCA
AAGTTGGTTAAGAGATCTGGTTCTCAATAAATATTAAACAACAACTGTTA
TAATGATGGTGACTTTTTTGTTGAGCACAGCACTTGAATTTTTGATTCAG
ACAAACTATTAGCTTCAAGCTCTAATAGAGTATTGATTGCATATGGGGAT
TCTAAATAACAAAAAAGTGATCTTCACAAATGACAAACACCACAGAACAG
AGATCCTAATTAACACAGATATTTATGGCCATCGCACGTGAGTACTGTTG
CAGTAACTTCTGGGAACTCTATCTGAATAACTAACACTAAACATGATCCT
TAGGCATTGACTGACAGAACGCGACTGGCTACAGTTCATTCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_p18.g1 MSMg01no218_p18.g1 CHROMAT_FILE:
MSMg01no218_p18.g1 PHD_FILE: MSMg01no218_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:09 2005
         (340 letters)



>mm_chr14_96468599_96469340
          Length = 742

 Score =  619 bits (320), Expect = 0.0
 Identities = 336/342 (98%), Gaps = 2/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatataaataatgccaaagttggttaagagatctggttctcaataaatattaaacaa 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aacaatataaataatgccaaagttggttaagagatctggtcctcaataaatattaaacaa 260

                                                                       
Query: 61  caac--tgttataatgatggtgacttttttgttgagcacagcacttgaatttttgattca 118
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagtgttataatgatggtgacttttttgttgagcacagcacttgaatttttgattca 320

                                                                       
Query: 119 gacaaactattagcttcaagctctaatagagtattgattgcatatggggattctaaataa 178
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaaactattagtttcaagctctaatagagtattgattgcatatggggattctaaataa 380

                                                                       
Query: 179 caaaaaagtgatcttcacaaatgacaaacaccacagaacagagatcctaattaacacaga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaaagtgatcttcacaaatgacaaacaccacagaacagagatcctaattaacacaga 440

                                                                       
Query: 239 tatttatggccatcgcacgtgagtactgttgcagtaacttctgggaactctatctgaata 298
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttatggccatcacacgtgagtactgttgcagtaacttctgggaactctatctgaata 500

                                                     
Query: 299 actaacactaaacatgatccttaggcattgactgacagaacg 340
           |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 actaacactaaacatgatacttaggcattgactgacagaacg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 742
Length adjustment: 9
Effective length of query: 331
Effective length of database: 733
Effective search space:   242623
Effective search space used:   242623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)