BAC Information

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BAC

Clone NameMSMg01-231O21
Chromosome14 (Build37)
Map Location 71,645,939 - 71,646,224
singlet/doubletsinglet
Overlap geneLOC100043132
Upstream genePpp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
Downstream geneLOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231O21.T7 (MSMg01no231_o21.b1)MSMg01-231O21.TJ (MSMg01no231_o21.g1)
ACCAG398598AG398599
length760989
length of high quality
(start - end)
286 (70 - 355)---
definitionCHROMAT_FILE: MSMg01no231_o21.b1 PHD_FILE: MSMg01no231_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:19 2005CHROMAT_FILE: MSMg01no231_o21.g1 PHD_FILE: MSMg01no231_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACCACGCAAATCAACAACCGCACACACAAAATCCAACAGAAAGCC
CCCTCGGCACATCAAGGGGATGCTGTTGCCCAAGCTGAAATAACTTTTCC
ATAATGTAGTGAAACATATTAAATTCAATAGACATCAAAGGAACTTTGCG
AGCAATTGCTGAATTTCCTGAAGTAAACAGGCTTTCAAAGAAAGCACTGG
ATCATGGGGGTGGGAGCACGTTTTGAGGGGGCAAAACATGGAATGCCCAG
GCTCTCCATCAGAGAACTGTCTTCTTTAAAGAGTGGTAATAAGTGAGGCC
TTGAAATTGTTTTTGACCCCCCGAGCANCCCCTGCAGCTGGAGACTGCAA
GTGACAAGTCTATCCCCAAATGACAAAAAAGAATGATGCTGTCCCCAATT
TCATTCTGCTGGCTATTCAGAATGAGCAAATCACTGCAGACCAAGGGGAT
TCTAACATGAGGAAGACAGCTTCGTGCGCGCCTCATAGTAGTAGATGGCT
TTGTGTTGGGAGCACGTCCACAGTACCTGTTGAAGCCCCATTGTTGGAGC
TATCACAATTTCTAAATCCTAAGGTGCGCGTGCGCGCCCTATGAGTTGTG
TCCCTTTACCTACCCGACAAAGCTCCCCACGTTCAACCCCCCCCCCTTTT
TTTTTTACCCCTAGCCCTAATCCTATCCCCCCCCGTCCCTTATCCCCCCC
CTCTTTCCTC
ATACTTTCCCTTCCCTATTTACCTTTTTTTTCTTTTCTCNNCCTACGATG
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCCAGTTCTCTCAGGCCTTCCAGGGATGTGGCT
TTCGGAACACGACGTATTACTGGTTCACCACTATAAACACCGTAATCAAA
GTACTTTGGACGTATCCTACTTATCAACCGATCTCACCTTTCAGCATTTC
CTTTATGAACTCGCCGCCCAATGGTGGATTGATTATTGAACCTTGAACTT
TACCGAAACCCTATAAATGAATCCGCCGTATGACCCACTTTTCACTTTCT
CAACCTCCCAAGAAACAGGTTCTCGGAAATCCCGTGACCTCGGCCCGGCC
TTTTTTTTTTTGTTATAACTTCGGTTTATGCCCACCACCCACCACCGCTA
GTTTTTTTTTTATAATTTTCCCCACCCCCCCCCCCCCCCCTTCCCTTATT
TTTTTATTTTTTTTAGGGATTCTTTTCCCCCTCCTTTAAAAAAAAAAAAA
AAAATACCCCCGTTGTGGGGGTTTTCGCCTCTTCTCCCCCTTATATCCCC
TATTAATCTCTCCCTTTTTCCCCCCTCTCTCCGGCTCCTTTCCCTTCGTT
CGGGTTCTCTTTGCTCTCTTTTTCCCGCTATTCCACCTTATGCTCCCTTT
ATTTACCCCCTTTTCCCCCTCGTCCTTTCCTCCTTCTCCTTATACCCCTT
TTTTATTTTTATCCCTTTTTCACCTTCGACACTGTGTTATATTCTTTACT
ACCCTTTACTTTATCTGTTCTCCCTCCCCCTCTAGTCGCCTTACTTTTCT
TTTNCCGCTTCCCTTTCCCCTCCGACCCTTCCTCCCGTATATATCCTACC
GCTTCTATTTTACTGCTTCTTTTATATCCCGTCCACATTACAGCATGACT
TGTTTTACCTCTCTTCCACTTTGTTTATCCCCGCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_o21.b1 MSMg01no231_o21.b1 CHROMAT_FILE:
MSMg01no231_o21.b1 PHD_FILE: MSMg01no231_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:19 2005
         (286 letters)



>mm_chr14_71645739_71646424
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccgcacacacaaaatccaacagaaagccccctcggcacatcaaggggatgctgttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccgcacacacaaaatccaacagaaagccccctcggcacatcaaggggatgctgttgc 260

                                                                       
Query: 61  ccaagctgaaataacttttccataatgtagtgaaacatattaaattcaatagacatcaaa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagctgaaatagcttttccataatgtagtgaaacatattaaattcaatagacatcaaa 320

                                                                       
Query: 121 ggaactttgcgagcaattgctgaatttcctgaagtaaacaggctttcaaagaaagcactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaactttgcgagcaattgctgaatttcctgaagtaaacaggctttcaaagaaagcactg 380

                                                                       
Query: 181 gatcatgggggtgggagcacgttttgagggggcaaaacatggaatgcccaggctctccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gatcatgggggtgggagcacgttttgagggggcaaaacatggaatgcccgggctctccat 440

                                                         
Query: 241 cagagaactgtcttctttaaagagtggtaataagtgaggccttgaa 286
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagaactgacttctttaaagagtggtaataagtgaggccttgaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)