BAC Information

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BAC

Clone NameMSMg01-232C18
Chromosome14 (Build37)
Map Location 75,852,619 - 75,852,889
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
Downstream geneGm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232C18.T7 (MSMg01no232_c18.b1)MSMg01-232C18.TJ (MSMg01no232_c18.g1)
ACCAG398763AG398764
length743742
length of high quality
(start - end)
274 (41 - 314)241 (71 - 311)
definitionCHROMAT_FILE: MSMg01no232_c18.b1 PHD_FILE: MSMg01no232_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:36 2005CHROMAT_FILE: MSMg01no232_c18.g1 PHD_FILE: MSMg01no232_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCATGCCTTCCCTTCAACTTTGTCGTGAGTCAAAAACTGCTCTAAAATA
GTCTTTAATCCAATTAAAAGGAACATTCATGTTTGTTTGTTTGTTTTTAT
GGCTCAAAGTACTTGGCTGGCCTTCATCCTACATGATGGTGTCTTTATCT
TGCTTACGGCCGTTTTATTTAAAATTCACCTCTGAATAAATAATGGGAAA
AAATGCCACTGTCAATGGGTTTACTTCTAATACGGCAAGGAAAAAACAAA
GCAAAAGTAAACAAATTTTCAAACAAATAAATGTATGTAAATAAAATAAT
ATTTCCTTTATCCCCGAACGTACCCCTGGAAGTTTAGATCTTCTGACTCA
TGCCACCCCCCCCCTCAAAATAATTTTATTTTATTAGAAAAAAAACAATA
TAGCTGGTCAAAGTGGCACACACCTGTGATCCCCGTATTCAGGGTGCAGA
GGGAAGTCATTTCTGGCCATGTATAAGCCAGCTTGGGCTATATGAGATCC
CATCTCATAATGCCAAGGCGTTAGGGTGCTGTCAAGAGTCTCAGTGCTAA
AGCCTGACAACTGGTATTCAGTATCCCCTAAACTCTCATGCTGGAAGGAC
AATTGACACCCGCATGTCTGCAAGTCGCCCTCTGATTTCACCTATAGTCC
CGCCCTCACTTTTTTTTTTCCTCCCCACCTCTTTCACCTTTCT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCCCAAAAATCTACCCAGTATCTATTTCC
CCAACAGCGGTGTTCTAAGTGCATACCATCACACCCTGCTTTTTCATGTG
GGATCTGGGAATCAGATTAAGATCCTTCTGCCTACAGAGCCAATACTTTA
CCGACTGAGCCATCTTTTCATTCTCTCCCCTTTAACGTTTTGTTAACCCT
GGGTGTATTAACTATGAAAGTGCTTTTGCAGAAAGCAGCGTGACTTTTAG
ATGTGCGGTGTAATTGGACATTGTGAGATCTTTCTATTTTATTGCTTAAA
AAATTTTTCTCAGCCGCTAGACCCAGAGCTTGCTGTCGTAGGTAAATGTC
AGGTGCCCCCCCCACATTTCTTGAGCTGCTTCTTGGAGTCTCAGTGTGTG
TAAAAATATGCATTCCTAAACCCAATGCTTCTCTTCATGTCCTCTCTGTG
GTAAGTTGAGTTAAAATGAAATTTTCCTTAATGATGTAGGGGAAAGTAGT
TTCACAGAATCAATTTCAATTTTAAGAGTACCTTGAGGATTCCTGGGAGT
TCGTGAGTTTTACCGTATTGGATTAATAGGCACGCCTGATGCTACGATTC
TAGAGCACATACTGTCAGGGGTATATGTCCCCCTTCTTGGTTTCACTTCA
AGGATCATAATGGGAGGAATGATCTTTAAATGAACCTCCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_c18.b1 MSMg01no232_c18.b1 CHROMAT_FILE:
MSMg01no232_c18.b1 PHD_FILE: MSMg01no232_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:36 2005
         (274 letters)



>mm_chr14_75852416_75853089
          Length = 674

 Score =  509 bits (263), Expect = e-149
 Identities = 269/271 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcatgccttcccttcaactttgtcgtgagtcaaaaactgctctaaaatagtc 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatttctcatgccttcccttcaactttgtcgtgagtcaaaaactgctctaaaatagtc 263

                                                                       
Query: 64  tttaatccaattaaaaggaacattcatgtttgtttgtttgtttttatggctcaaagtact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaatccaattaaaaggaacattcatgtttgtttgtttgtttttatggctcaaagtact 323

                                                                       
Query: 124 tggctggccttcatcctacatgatggtgtctttatcttgcttacggccgttttatttaaa 183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cggctggccttcatcctacatgatggtgtctttatcttgcttacggccgttttatttaaa 383

                                                                       
Query: 184 attcacctctgaataaataatgggaaaaaatgccactgtcaatgggtttacttctaatac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attcacctctgaataaataatgggaaaaaatgccactgtcaatgggtttacttctaatac 443

                                          
Query: 244 ggcaaggaaaaaacaaagcaaaagtaaacaa 274
           |||||||||||||||||||||||||||||||
Sbjct: 444 ggcaaggaaaaaacaaagcaaaagtaaacaa 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)