BAC Information

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BAC

Clone NameMSMg01-232D06
Chromosome14 (Build37)
Map Location 108,392,495 - 108,392,812
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232D06.T7 (MSMg01no232_d06.b1)MSMg01-232D06.TJ (MSMg01no232_d06.g1)
ACCAG398785AG398786
length717711
length of high quality
(start - end)
322 (46 - 367)485 (74 - 558)
definitionCHROMAT_FILE: MSMg01no232_d06.b1 PHD_FILE: MSMg01no232_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:38 2005CHROMAT_FILE: MSMg01no232_d06.g1 PHD_FILE: MSMg01no232_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTGGCTTTACCATCTGGTGACACAATTGTAGATGATTGTAGAT
ATGTCCTAGATATCTCAGGTGTTGTTATGTAGTGCTTAATGCAATCTGAA
TAAACATTGAATAGAGTGAGCCACAGACTCTGCCCCTGTTTGAGGAGAAT
TTTGGTATTTTCTTGAAAAAAAATCATTTTAGAAATCCATTAACTGTATA
AGAACTGGTATTTCTAAAGCATGCATTCATTGTATTTATCAAAAAGCTGG
AGTGTTTGTGTGCCTGGGAATTTGGGGCTAGTAATGAACATTATTGTTTA
ATTTTGTCCTTTAAAATATGTCTTCCTCACCTTTTAGGAAAATAATTTTA
TGTTATCATAGTTTTGCCAACACTTACAAACTTTTCATTTTGTACTCAAA
TTAGAAACATAACAAGGAACATATTCTTTTTCTGTTCAAAATATGTAAGG
ATTATATTTTCAATTATGGCATATGTAATTTAAGACCCAATTCTATAGTT
TGCTTTGTCTCAAGATGGCTCAGATATTTATATTTTCTACAATTCATAAT
CTTCCATTTTTTTTCTGATTATTTATATAGTCATAAGAAACTCAAAGATA
CTGACCAGGCAAAGAGAGTGTTTTCTGTTGATTAAGTTCAATGTATTGAA
TAGTTTACTATAAAATT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAGGGTCCCCTCAACCTCCGGCCTC
CTGAGGTTGCCTGTTCCCATTCTTTCTGCTGGCCCTCAGGGCTTCAGTAC
TTTTTATCCACCCAATACCAGATCAGGTTCCCCTCTTCTCCACTGCCCTG
TCCACTTTCCCTCCCAGACCCCTCCCTTCCTCCTTCTTGTGATTGCTTTC
TTCTCTGTCTAAGTGGGACTGAGGTGTCTTCACTTGGGCATTTCAGCTTG
GTGACCATTTTATGATCTGTGGACTTTATCTTGGGTATTCTGTACTTTTA
AAATTCATTTTTAATTTTTACTGGCTAATATCCACTTATTAATGAGTACA
TATCATTCATGTCTTACTGAGTCTGAGTTATCTCACTCAGCATGATATTT
TTCTAGTTCTATCCATTTGCCTGCAAAACTAATGATGTTCTCATTCTTAA
TAGCTGAGTAATATTCCATTGTGTAAATGAACCACATATTCTGTATCCAT
TCTTCTGTAGTGGGACATCTGGGCTGTTTCCAGCTTCTGGCTATTAAAAA
CAAGGCTGCTATGAACATATGCATTATGTGCCCCTGTGGCATGCCGGGGC
ATCTTTGTGCATATTCTCAAGAGTGTTATAGCTGGTTCTTCAGGTAGATT
TATTTCCAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_d06.b1 MSMg01no232_d06.b1 CHROMAT_FILE:
MSMg01no232_d06.b1 PHD_FILE: MSMg01no232_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:38 2005
         (322 letters)



>mm_chr14_108392292_108393012
          Length = 721

 Score =  511 bits (264), Expect = e-149
 Identities = 306/322 (95%), Gaps = 7/322 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcttggctttaccatctggtga--caca-attgtagatgattgtagatatgtc 60
           ||||||||| |||||||| || |||||||     | ||||||||||||||||||||||||
Sbjct: 204 ggaattctcctggctttatcacctggtgatg---agattgtagatgattgtagatatgtc 260

                                                                       
Query: 61  ctagatatctcaggtgttgttatgtagtgcttaatgcaatctgaataaacattgaataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct: 261 ctagatatctcaggtgttgttatgtagtgcttaatgcaatctgaataaatactgtataga 320

                                                                       
Query: 121 gtgagccacagactctgcccctgtttgaggagaattttggtattttcttgaaaaaaaatc 180
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gtgagccacagaccctgcccctgtttgaggagaattttggtattttcttg-aaaaaaatc 379

                                                                       
Query: 181 attttagaaatccattaactgtataagaactggtatttctaaagcatgcattcattgtat 240
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 attatagaaatccattaactgtctaagaactggtatttctaaagcatgcattcattgtat 439

                                                                       
Query: 241 ttatcaaaaagctggagtgtttgtgtgcctgggaatttggggctagtaatgaacattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttatcaaaaagctggagtgtttgtgtgcctgggaatttggggctagtaatgaacattatt 499

                                 
Query: 301 gtttaattttgtcctttaaaat 322
           ||||||||||||||||||||||
Sbjct: 500 gtttaattttgtcctttaaaat 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)