BAC Information

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BAC

Clone NameMSMg01-232D08
Chromosome14 (Build37)
Map Location 60,451,760 - 60,595,143
singlet/doubletdoublet
Overlap geneAtp8a2
Upstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l, Cdadc1, Tmem46
Downstream geneLOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232D08.T7 (MSMg01no232_d08.b1)MSMg01-232D08.TJ (MSMg01no232_d08.g1)
ACCAG398789AG398790
length731731
length of high quality
(start - end)
280 (43 - 322)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no232_d08.b1 PHD_FILE: MSMg01no232_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:39 2005CHROMAT_FILE: MSMg01no232_d08.g1 PHD_FILE: MSMg01no232_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,594,869 - 60,595,143)(60,451,760 - 60,452,045)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGTAAT
TCCTCAGTCACCTACTCATTGCTTGTAGGTTACAAAGCCCGAAGAGGAGA
AGGAGAGGCAATGAGAAGATGGAATGTGTCTCCAGGTGACTGTGTTACAG
CTGCCAGCGACTGTACCTGTGGGCAAATACTTTGCCTTAGAGTCTGGCTC
TGTGTCACTCATATTTTGTTAAGTTGCCAGGTGACCCAAATAACCTTAAC
AAGATAATTTAATGTTTTTAAATATATGAATATCATTGAGTATCATTGGA
ATGGTGTACTTCCCACGCATAATTTATTGCACTTCAAAACATTCCATGTT
CTGAAAGCAATTTTTTTTTCACCCCCGCCCCACCCACTTGTCAAGTGAGT
GATTTGCTGTTATTAGCCCCACGAATACAAACTAAGTGAACTATACGTGC
CCACGGGTGGTCTTGTTTCTGAACTACTTTGCAGAACACTAGCCTATTTA
CCCCTACAAAGTGATTGGTGCAATTTTCCTGATGACTTGCCCTCTCCAGT
TTTTCACTTCAATCTCAGTTCCTTTGTGCTTAACCTATCATATTATTTTA
AAAATTACATGTCTTTCATCTGCATCAACTATGTTGCCTATGTTTTGCTT
GAGTTACCCGAAGTCTATAACGATTGCCTTTTTCATGTAAATTTTCTCAA
AATATACTTTCCATCATTTTTTGGTTTTCTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAAGGCAGACTTTGTGATGGAGATTTT
TGTCTTCCCATCACATTGTGGGGTTCACGACCTGAATGGTCATTTAAACG
CAGCTCATGCAGATGTGTCGAAATCCAGTATACATCAGGAAGATCATTCT
GGGTACCCTGCTAACACGTGGGACACCGCTGAATAACACTTATCTAGAAG
GGAGAATTATTTGTAAAGACAAATACAGATATGAGCTTTCAGGACAGTGG
AAGGGCTTCAAACATATCCAGTGATTCCCTGTCTTGCTTGTGGTACCCTA
TTCGGTGATGTTTTTTTTGTCCCCGGACGATCCACGATAATCTTTTGACC
TTATTGTGCAAGTTACACCTACTATCTGAGAAAAATTACTTTCTAACCCC
CTTCTTTACGGCTCCTACTCACATGTTTGTATGACTACGTTACATGTATT
TTCTTCAGTATAGAACTCAATGTATCATTTTAGAATACTATTAAACCTAT
ATCAGTGTCACAGAACTTACCTTCCATAATTTTGTTATTCTACTAAAAAC
ATGTATGTTCTTATACTCCCCCCTGCCTTGGCCATGCGCCTTATATGCAC
ACATATTTGCACCTTGAGCCCTAGGAAGCACACATATTACTCTTTACTTT
CATAGTGTTTTCTCTTGTCTACCACCCACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_d08.b1 MSMg01no232_d08.b1 CHROMAT_FILE:
MSMg01no232_d08.b1 PHD_FILE: MSMg01no232_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:39 2005
         (280 letters)



>mm_chr14_60594664_60595343
          Length = 680

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcctcagtcacctactcattgcttgtaggttacaaagcccgaagaggagaaggagag 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aattcctcagtcacctactcattgcttgtaggttacaaagcccgaagaggagaaggagag 421

                                                                       
Query: 66  gcaatgagaagatggaatgtgtctccaggtgactgtgttacagctgccagcgactgtacc 125
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcagtgagaagatggaatgtgtctccaggtgactgtgttacagctgccagcgactgtacc 361

                                                                       
Query: 126 tgtgggcaaatactttgccttagagtctggctctgtgtcactcatattttgttaagttgc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgtgggcaaatactttgccttagagtctggctctgtgtcactcatattttgttaagttgc 301

                                                                       
Query: 186 caggtgacccaaataaccttaacaagataatttaatgtttttaaatatatgaatatcatt 245
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 300 caggtgacccaaataaccttaactagataatttaatgtttttaaatatatgaatatcatt 241

                                              
Query: 246 gagtatcattggaatggtgtacttcccacgcataa 280
           |||||||||||||||||||||||||||||||||||
Sbjct: 240 gagtatcattggaatggtgtacttcccacgcataa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no232_d08.g1 MSMg01no232_d08.g1 CHROMAT_FILE:
MSMg01no232_d08.g1 PHD_FILE: MSMg01no232_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:39 2005
         (286 letters)



>mm_chr14_60451560_60452245
          Length = 686

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaggcagactttgtgatggagatttttgtcttcccatcacattgtggggttcacgacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ataaggcagactttgtgatggagatttttgtcttcccatcacattgtggggttcacaacc 260

                                                                       
Query: 61  tgaatggtcatttaaacgcagctcatgcagatgtgtcgaaatccagtatacatcaggaag 120
           |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 261 tgaatggtcatttaaatgcagctcatgcagatgtgtcaaaatccagtaaacatcaggaag 320

                                                                       
Query: 121 atcattctgggtaccctgctaacacgtgggacaccgctgaataacacttatctagaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 atcattctgggtaccctgctaacacgtgggacaccgctgaataacacttatctaggaggg 380

                                                                       
Query: 181 agaattatttgtaaagacaaatacagatatgagctttcaggacagtggaagggcttcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaattatttgtaaagacaaatacagatatgagctttcaggacagtggaagggcttcaaa 440

                                                         
Query: 241 catatccagtgattccctgtcttgcttgtggtaccctattcggtga 286
           ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 441 catatccagtgataccctgtcttgcttgtggcaccctattcggtga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)