BAC Information

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BAC

Clone NameMSMg01-233B05
Chromosome14 (Build37)
Map Location 13,867,956 - 13,868,273
singlet/doubletsinglet
Overlap genenone
Upstream genePtprg, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
Downstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233B05.T7 (MSMg01no233_b05.b1)MSMg01-233B05.TJ (MSMg01no233_b05.g1)
ACCAG399387AG399388
length735739
length of high quality
(start - end)
321 (45 - 365)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no233_b05.b1 PHD_FILE: MSMg01no233_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:43 2005CHROMAT_FILE: MSMg01no233_b05.g1 PHD_FILE: MSMg01no233_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTTCTATTCCTTTTAATTAAAACTTTATTATTAAAACTCTTGGA
AATAAACGCATTCATTCAACATTTTTTTTTCTTTCTCTGTTTTTGTAGGG
AGCAAAGTATTGGACTTCCTGTTTACTTTCTCGGCTCTTCTGAAAGCCTA
TTAATCAGGATGGAGGGTGATCAATACAATCCAAAGTAGGATGCTCTACA
CCCCCATCAGATCACCATAAATAGACACACATTGCAATTATCATCAGAAG
GATTTGTTACATCTGAGAGTGGATGAAGAAGGGGGAGACTGAGCATCAGA
ATTAAATCCCCCTATTTTATTCCTCACTCCCCCCGCGGNGNAAACCTCCA
GGTCTGCCTTGGTTTTGCTGCCCCCTTACAAAAAATGAATGGTTCCTAAG
AATAAAAGTTCTCTTCTTGTGTTGATGCGTTCTGCATAATAAATACATTC
TTTGCACGCTCTATGACTGTTTTAGCACAATAACATTTTAATATCAGTCT
GTTCCTTCCCCACTGCCTTCTTCTTCAGAATGATTTGTGTTGAGTGAATG
TCTCATAGTGATGCTGTAACATCTATTCTATTTTCTATTATCCCATCTTT
TTCCCTTAATGCTCTACGTTCTCTTTTACTAACACCTGTCTTTTTGGTAG
TTTTTTGTTCACTGGTTTTTATTATCTCCTCTTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTGACAAATGGAGATTCTCCACA
GATACTTAAAAGAACAGCCAAGTTACACTCATACAAGAATTTATCAGGGC
CCAAGAAATAGGGGGGGTTGTGGTATTGCATTATTCATGAGAAGGTCTGC
TAGAGCAGAACCCCCTGGTTCTAGCTTTCACAAGGCTCAAAGGAGTAGCA
CAAATTGTGACTAGGGTGTGAAATCCTTAGCTGTCATTAAGCTGACCCTA
GGCAGGACTGCTTTATCTTTACTGTAAACATTTACCTGGTTCCTGTAAGC
CCTTTTGAAGTTTTATCNNTGTCCTGTGCCAGCCCCCTTCAATGTACTTT
GCCTGCTGTGACATCCTTCCCCCTTTATAAAAGAATTATATAAGACTGGT
GTTCACTTTGTGACAATACATTCAGGTTCTACACAATCTCCTGTGTGCAT
CTGTCTGTCATTCACCAACTCCTTGCCCATCTGCAACCAGAGACCCGTCC
TACGCAGACAAGGGACCAAGGGGGTCTGCAGCTATCTTGTCCCGTGGGAT
TTCAGTTATTCGTGGGTGCGAGGAGAACCACCAACCTGGAAGAAAATGGC
ATGTAGGTAACGAATTGCTGATTACCATAACGTGTTTTTATTCAGGTCTT
CATTCTTTTATCCCTGATATGTCTTGCCTCTAAAGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_b05.b1 MSMg01no233_b05.b1 CHROMAT_FILE:
MSMg01no233_b05.b1 PHD_FILE: MSMg01no233_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:43 2005
         (321 letters)



>mm_chr14_13867752_13868474
          Length = 723

 Score =  567 bits (293), Expect = e-166
 Identities = 312/319 (97%), Gaps = 4/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctttctattcctttt-aattaaaactttattattaaaactcttggaaataaac 63
           ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattttctttctatt-cttttaaattaaaactttattattaaaactcttggaaataaac 263

                                                                       
Query: 64  gcattcattcaacatttttttt--tctttctctgtttttgtagggagcaaagtattggac 121
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcattcattcaacatttttttttgtctttctctgtttttgtagggagcaaagtattggac 323

                                                                       
Query: 122 ttcctgtttactttctcggctcttctgaaagcctattaatcaggatggagggtgatcaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcctgtttactttctcggctcttctgaaagcctattaatcaggatggagggtgatcaat 383

                                                                       
Query: 182 acaatccaaagtaggatgctctacacccccatcagatcaccataaatagacacacattgc 241
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaatccaaagtaggatgctctacacccccatcagatcaccataaatagacacacattgc 443

                                                                       
Query: 242 aattatcatcagaaggatttgttacatctgagagtggatgaagaagggggagactgagca 301
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 aattatcatcagaaggatttgttacatctgagagtggatgaagaagggagagactgagca 503

                              
Query: 302 tcagaattaaatcccccta 320
           |||||||||||||||||||
Sbjct: 504 tcagaattaaatcccccta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 723
Length adjustment: 9
Effective length of query: 312
Effective length of database: 714
Effective search space:   222768
Effective search space used:   222768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)