BAC Information

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BAC

Clone NameMSMg01-233O01
Chromosome14 (Build37)
Map Location 86,180,927 - 86,181,582
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233O01.T7 (MSMg01no233_o01.b1)MSMg01-233O01.TJ (MSMg01no233_o01.g1)
ACCAG399941AG399942
length742732
length of high quality
(start - end)
698 (45 - 742)656 (77 - 732)
definitionCHROMAT_FILE: MSMg01no233_o01.b1 PHD_FILE: MSMg01no233_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:41 2005CHROMAT_FILE: MSMg01no233_o01.g1 PHD_FILE: MSMg01no233_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGTACCATACCGAAGGGCTGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGTTTC
CACCTCATATGAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAG
ATCCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGGAAGTTTGTACAACCACTCTGGAAATCAATCTGGTGGTTCCTCAGA
AAATTGGATCCCGCAATACCTCTCCTGGGCATATATCCAAATGTTCCAAC
CAGTAAGAAGGACACATACTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAGAGAACCCATGCCCCTCAACAGAGGAATGGATATA
GAAAATACAGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGA
GTGAAATTATGAAAATCCTAGGCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACCCAATCACAAAGGATCTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAGAAACTTAGAATGCCCAAGATATAAGATAC
AATTTGCTAAACACATGAAACTCAAATAGAATGAAGTCCAAAGTGTGGAC
ACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATCGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGTCCACCACAGCCACCAAGT
TACCGGGTTAACTATTAATGTGATACCTTTGCAACAACTAAGGATTCACT
ATTTCCTGTGAATTTTGAAAAAGGTCTGTAATTTAGATGTCCGTCTGTCC
TATCATCCCTTTGCAGCTCGCAGGGCTCAAACAGACACCATGTAGCATTA
CAGGCACATGATCTCACCCCTGAGGAGCCAAGGCTGGCTTTCTCTCTTTC
TTTACATTTTCCTTTCAGTTTCTAGACTTCTTCTTTGTGGATTTCTTTGA
AATTCATATTAACACTAATTCAGAAATCATTTATAAATTATGTTTTATAC
AATTCTTAAGTAAATAGAGGTATTCAATAATAATAAAAATAAATGTCTTA
TACACGTGAAGCCATTGTTTTAATATATAAAGTTATCTCATGCTGCCCGA
TACTAAGACTCCCACTGCAATTGTCTTACTTAGCATATCTACTTAAAACT
TTTACTGATGATATAAATCATCCTTACATTTGGCATATACTTAATTAAAC
ATTAAAAACTACAAGTCACGTTTGTTTAAAGTTCTTTCTTAATTTTAAAT
TTAATTATCTGAAAATTATCAATCATGTTATTAGTCCACACTTGAAATTG
CATGCCTGTCAATGTAATTATTAATGCCAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_o01.g1 MSMg01no233_o01.g1 CHROMAT_FILE:
MSMg01no233_o01.g1 PHD_FILE: MSMg01no233_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:41 2005
         (656 letters)



>mm_chr14_86180727_86181782
          Length = 1056

 Score = 1237 bits (640), Expect = 0.0
 Identities = 652/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtgtccaccacagccaccaagttaccgggttaactattaatgtgatacctttgcaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 aagtgtccaccacagccaccaagttaccgggttaactattaatgtgatacctttgcaaca 797

                                                                       
Query: 61  actaaggattcactatttcctgtgaattttgaaaaaggtctgtaatttagatgtccgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actaaggattcactatttcctgtgaattttgaaaaaggtctgtaatttagatgtccgtct 737

                                                                       
Query: 121 gtcctatcatccctttgcagctcgcagggctcaaacagacaccatgtagcattacaggca 180
           |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||
Sbjct: 736 gtcctatcatccctttgcagcttgcagggctcacccagacaccatgtagcattacaggca 677

                                                                       
Query: 181 catgatctcacccctgaggagccaaggctggctttctctctttctttacattttcctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 catgatctcacccctgaggagccaaggctggctttctctctttctttacattttcctttc 617

                                                                       
Query: 241 agtttctagacttcttctttgtggatttctttgaaattcatattaacactaattcagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agtttctagacttcttctttgtggatttctttgaaattcatattaacactaattcagaaa 557

                                                                       
Query: 301 tcatttataaattatgttttatacaattcttaagtaaatagaggtattcaataataataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcatttataaattatgttttatacaattcttaagtaaatagaggtattcaataataataa 497

                                                                       
Query: 361 aaataaatgtcttatacacgtgaagccattgttttaatatataaagttatctcatgctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatgtcttatacacgtgaagccattgttttaatatataaagttatctcatgctgc 437

                                                                       
Query: 421 ccgatactaagactcccactgcaattgtcttacttagcatatctacttaaaacttttact 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccgatactaagactctcactgcaattgtcttacttagcatatctacttaaaacttttact 377

                                                                       
Query: 481 gatgatataaatcatccttacatttggcatatacttaattaaacattaaaaactacaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gatgatataaatcatccttacatttggcatatacttaattaaacattaaaaactacaagt 317

                                                                       
Query: 541 cacgtttgtttaaagttctttcttaattttaaatttaattatctgaaaattatcaatcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cacgtttgtttaaagttctttcttaattttaaatttaattatctgaaaattatcaatcat 257

                                                                   
Query: 601 gttattagtccacacttgaaattgcatgcctgtcaatgtaattattaatgccagcc 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttattagtccacacttgaaattgcatgcctgtcaatgtaattattaatgccagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)