Query= MSMg01no235_g02.b1 MSMg01no235_g02.b1 CHROMAT_FILE:
MSMg01no235_g02.b1 PHD_FILE: MSMg01no235_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:41 2005
(661 letters)
>mm_chr14_57142868_57143927
Length = 1060
Score = 978 bits (506), Expect = 0.0
Identities = 521/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 5 gaattccatcttttgagaaatacgaatatctgagatgcatttaaagatatcggagatgca 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattccatcttttgagaaatacaaatatctgagatgcatttaaagatatcggagatgca 466
Query: 65 tttataaggaattcagcattaatctctgtggtcatagcacttgtgtagacacacctgctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttataaggaattcagcattaatctctgtggtcatagcacttgtgtagacacacctgctg 406
Query: 125 actaaacaggcgaccaagaagtacacttacaatcattcatctttatctgcaagccccatt 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 405 actaaacaggcgaccaagaagtacacttac-atcattcatctttatctgcaagccccatt 347
Query: 185 tctaccaaggacatgtgaactgggtattgttcatcttcatataatgtcactatttgttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctaccaaggacatgtgaactgggtattgttcatcttcatataatgtcactatttgttct 287
Query: 245 ggtgcctgagcctaaaattgaaagatacagttatcagggaaacaataatgtgtctgtgta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ggtgcctgagcctaaaattgaaagatacagttatcagggaaacaataatgtgtctgtgta 227
Query: 305 cacatctataatgttgtggtaacatacctataatcttaccactcaggaggcagaagcaga 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 226 cacatctataatgttgtggtaacatacctataatcttaccactcaggagccagaagcaga 167
Query: 365 aagttcacaaaaaaccccaaccccacaaacaaaacacagtgctgtctttggtgccctctg 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aagttcacaaaaaacaccaaccccacaaacaaaacacagtgctgtctttggtgccctctg 107
Query: 425 tctcctccacctggctgctctccctgggaggaaggcacaagactaattcatactctacct 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tctcctccacctggctgatctccctgggaggaaggcacaagactaattcatactctacct 47
Query: 485 tcagagggcaaagctaatggattcttgctaaatcctattcctccca 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tcagagggcaaagctaatggattcttgctaaatcctattcctccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_g02.g1 MSMg01no235_g02.g1 CHROMAT_FILE:
MSMg01no235_g02.g1 PHD_FILE: MSMg01no235_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:41 2005
(290 letters)
>mm_chr14_57032796_57033486
Length = 691
Score = 509 bits (263), Expect = e-148
Identities = 283/293 (96%), Gaps = 8/293 (2%)
Strand = Plus / Plus
Query: 1 aaaggatgataagtgtgtt-tgaagcaattaaagagatcactataaacttctgagtgaat 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggatgataagtgtgttatgaagcaattaaagagatcactataaacttctgagtgaat 260
Query: 60 ccccaaaggacaaagatagccaagtaatcaggaagtcagtacaacatatgaaagttgaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaaaggacaaagatagccaagtaatcaggaagtcagtacaacatatgaaagttgaat 320
Query: 120 tcaaaaaggagatggtttgaagagaaacccttcttcaaagatgctggaaatgaaatgttc 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaaggagatggtttgaagagaaacccttcttcaaagatgctggaaatgaaatgttc 380
Query: 180 aacaacaacaacaacaacaaaaaac--ccactcagttaaaatcttcactaatagagtgga 237
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 381 aacaacaacaacaacaa-----aacatccactcagttaaaatcttcactaatagagtgga 435
Query: 238 ccgcaaggagggcagaacatgagggcttgaaggacagtatagaagaattgtta 290
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccgaaaggagggcagaacatgagggcttgaaggacagtatagaagaattgtta 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
