BAC Information

Click to search

BAC

Clone NameMSMg01-235L19
Chromosome14 (Build37)
Map Location 103,919,547 - 103,920,174
singlet/doubletsinglet
Overlap geneScel
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
Downstream geneLOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235L19.T7 (MSMg01no235_l19.b1)MSMg01-235L19.TJ (MSMg01no235_l19.g1)
ACCAG401218AG401219
length722733
length of high quality
(start - end)
636 (46 - 681)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no235_l19.b1 PHD_FILE: MSMg01no235_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:08 2005CHROMAT_FILE: MSMg01no235_l19.g1 PHD_FILE: MSMg01no235_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATGAACTACTATTACCAAATTGCATACAGTACATCTCCCTTT
ATTAATCTAGATTGCATCAACGGACCACTTAAGTTTTGGAAATGAACTGG
AAGCATTGCTCAGCTGTCTGGCAGCAAGATGGCCCCAGGGAAACAGTGCT
ATCAGGACTAGTGTCAGCACACTTGGCTTCAGTGTGGTGGGAGCTGAGAA
GTTCCACACTGAGCTATCAGGAGATGTTGGCTCCACCCTTCATGACTGTT
GCTACCCCCAACCACACTTCAACTCTTGCTCATCTTTTGGTCTACCAGAG
TGATTCTCTGCAAGCCTTATATTTGCTACATTGTGTAGCATTTGGAGTTG
TATATAGAACCATTTACCACATTGTAGTCATACACACTTAATTACAGCTC
CTGTTTCTACCGCTTGCTCTGATCTGTGCAGGTTACATCTTGAGCGCCTA
TAATTAGAGATAATAGCACCCACTGAAAAGATTAAATAAGACGATATGCT
TGAGCACAAGAATCGGCACATGGCAGTGACCCAACAAGTGGCCCCTATTG
CTAAAAGTCTTGGTCACAGACCTTTTGCCATCTGTGCTGTTTACTAATAA
AAGAACCATGACTGTTCTGTTGACCCCTGGTCAGATTTGTAGGCTTGAGT
ACAAATTCCAACTGCAACTTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAGGAAACATCTATAGCTGAT
AAAAATCTTCAGCAACGTAGCTGGGCCACAAAATTACCTCACAAGAATTA
GTAGCTTTCCTATATACAAAGATTTCTGAGATAGGAAAAAAAATCCTTCA
CAATAGCCTCAAATAAGCGAGTGAAAGATTTGTGTGAATAAAAACTTCAA
GACATTGAAGAAAGAAATAAAAGAAAAGATATCAGAAGATAGAAAGATCT
CCCATGCTTATAGATCCGTGGGATTAACTTTATAAAAATGGCCATCTTGC
TGAAAGCAATCTACAGATTCTATACAATCTCCATAAAAATTCCAGTACAT
TTCTTCACAGATCTTGAAATGCCCACTTTCAGCTTCATATAGAAACACAA
TAAAAATCAAGATAGCTTAAAAAAAGGAAGAGAAGGGAAGGGAAGGGAAG
GGAAGGGAAGGGAAGNGNNNNNGNNNNNNNGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGNGNNNGNNNNNNGGNNGGTGGGGGGGGGGGN
GGGGGGGGGGGNGGGGNGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGG
GGGGGGNGGGAGNGGNNNGGGGGGGGTGGGGAGAGNGNGGGGAGGGGAGA
AAGGAGAGGAGAAGAAGAAGAATAGGAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_l19.b1 MSMg01no235_l19.b1 CHROMAT_FILE:
MSMg01no235_l19.b1 PHD_FILE: MSMg01no235_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:08 2005
         (636 letters)



>mm_chr14_103919343_103920378
          Length = 1036

 Score = 1160 bits (600), Expect = 0.0
 Identities = 621/628 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaatgaactactattaccaaattgcatacagtacatctccctttattaatcta 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaatgaactattattaccaaattgcatacagtacatctccctttattaatcta 264

                                                                       
Query: 65  gattgcatcaacggaccacttaagttttggaaatgaactggaagcattgctcagctgtct 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattgcatcaacggacaacttaagttttggaaatgaactggaagcattgctcagctgtct 324

                                                                       
Query: 125 ggcagcaagatggccccagggaaacagtgctatcaggactagtgtcagcacacttggctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcagcaagatggccccagggaaacagtgctatcaggactagtgtcagcacacttggctt 384

                                                                       
Query: 185 cagtgtggtgggagctgagaagttccacactgagctatcaggagatgttggctccaccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtgtggtgggagctgagaagttccacactgagctatcaggagatgttggctccaccct 444

                                                                       
Query: 245 tcatgactgttgctacccccaaccacacttcaactcttgctcatcttttggtctaccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatgactgttgctacccccaaccacacttcaactcttgctcatcttttggtctaccaga 504

                                                                       
Query: 305 gtgattctctgcaagccttatatttgctacattgtgtagcatttggagttgtatatagaa 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgattctctgcaagccttatattggctacattgtgtagcatttggagttgtatatagaa 564

                                                                       
Query: 365 ccatttaccacattgtagtcatacacacttaattacagctcctgtttctaccgcttgctc 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccatttactacattgtagtcatacacacttaattacagctcctgtttctaccgcttgctc 624

                                                                       
Query: 425 tgatctgtgcaggttacatcttgagcgcctataattagagataatagcacccactgaaaa 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgatctgtgcaggttacatcttgggcgcctataattagagataatagcacccactgaaaa 684

                                                                       
Query: 485 gattaaataagacgatatgcttgagcacaagaatcggcacatggcagtgacccaacaagt 544
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 gattaaataagacgatatgcttgagcacaagaatcggcacacggcagtgacccaacaagt 744

                                                                       
Query: 545 ggcccctattgctaaaagtcttggtcacagaccttttgccatctgtgctgtttactaata 604
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 745 ggcccctattgctaaaagtcttggtcacagaccttttgccttctgtgctgtttactaata 804

                                       
Query: 605 aaagaaccatgactgttctgttgacccc 632
           ||||||||||||||||||||||||||||
Sbjct: 805 aaagaaccatgactgttctgttgacccc 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)