BAC Information

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BAC

Clone NameMSMg01-236F08
Chromosome14 (Build37)
Map Location 84,139,115 - 84,139,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236F08.T7 (MSMg01no236_f08.b1)MSMg01-236F08.TJ (MSMg01no236_f08.g1)
ACCAG401620AG401621
length772777
length of high quality
(start - end)
419 (181 - 599)251 (130 - 380)
definitionCHROMAT_FILE: MSMg01no236_f08.b1 PHD_FILE: MSMg01no236_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:52 2005CHROMAT_FILE: MSMg01no236_f08.g1 PHD_FILE: MSMg01no236_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTTTCCCCCTTCCCTTTTTCCCAATCTGTCATTTACAAACCCCCNCC
NCCCATATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCATAACATTTTGCCTAAAAGAGGTTTCTCTGGTGGTATGG
GTAAGAGACAGTCACTTTGGGTATTGTCCTCTCTAAAGAGATATAATGGA
AACTAAGGTTTTGTCTTCTGCTCTGAACTTTAGATTGAATGTAATAGAAT
CCTCAATTTGTAGTGACTTTCCTAGTACTTTTGTAGTTATAATCTGATAA
TGCATACATAGCAGTAAAATATTTTTTTCTTCTGTATCTATCCTGTAAAG
GAGTTCTTTTATTACCACATTTGCTTGATTTTCCTAATTCTACAATAAAT
TCATGTGGAGGGCTGGAAGGTTACAATATACTGAAACAGTTGAGGTTCAT
GTGGTTGAATTAACAGCTAGATTCTGTATTATAGAGGCCACCCTTATATT
GTCTGGTTTGGCGTAATAGCCAGATGGATAGGCTTTTCTAAGTAATTGTT
CCTTTCTAAGTAAGTCATCATGTTACTTCTTGTTCATTGGGATCCCTATT
AGATTTAATAGGAGAAACATACAAAATAGTTGTCTTCAGTCCTTGTGTCT
GAGGTCTTCATGCTGTCTTAATAGGTGTAAGTATGTGCAAAATAGTTTTA
CTGTGTTTCATAAATGTTCAGTGAATTTGCATAAACCCGTTTATTTGTGA
AGTATTTTATCATAAGTATTAT
CCCCCTTTTTCCTCTTTCCTTTTTTTCTTTCTTCCTTTCCATNNNCNNCC
CATCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAAG
GCTGAGAAACACATGAAAAAATGTTCACCCTTCTTAATCATCAGAGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCACAATGCTGA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGACAGAG
GATCACTCCTCCATTGTTGGTGGCATTGCAAGCTTGTACAACCACTCTGA
AAATCAGTCTGGCGTTTTCTCTGAAAATTGTACATAGCACTACCAGAGGA
TCCCGCAATACCTCTCTTGTTCTTATATCCCCACCACGTCCCAACCAGTA
AAAAGGACACATGCTCCAATATGTTCATAGAAAACATTATTTATAATAGC
CAGAAGCTGGAAAGAATCCCGATGTCCCTCAACAGAGGAATGGATACAAA
AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTCACGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGTATCATCCT
GAGTGAGGTAACCCAATCACAAAAAAACTCAAATGAAATGTACTCATTGA
CAAGTGGATATTAACCCAGAATCTTAGTATAGCGAGATATAAGGCACAAT
ATGTTAAATATTTGAAACTTGACCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_f08.b1 MSMg01no236_f08.b1 CHROMAT_FILE:
MSMg01no236_f08.b1 PHD_FILE: MSMg01no236_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:52 2005
         (419 letters)



>mm_chr14_84138915_84139733
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaaagagatataatggaaactaaggttttgtcttctgctctgaactttagattgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctaaagagatataatggaaactaaggttttgtcttctgctctgaactttagattgaat 260

                                                                       
Query: 61  gtaatagaatcctcaatttgtagtgactttcctagtacttttgtagttataatctgataa 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gtaatagaatcctcaatttgtagtgactttcctaatacttttgtagttataatctgataa 320

                                                                       
Query: 121 tgcatacatagcagtaaaatatttttttcttctgtatctatcctgtaaaggagttctttt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatacatagcagcaaaatatttttttcttctgtatctatcctgtaaaggagttctttt 380

                                                                       
Query: 181 attaccacatttgcttgattttcctaattctacaataaattcatgtggagggctggaagg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 attaccacatttgcttgattttcctaattctataataaattcatgtggagggctggaagg 440

                                                                       
Query: 241 ttacaatatactgaaacagttgaggttcatgtggttgaattaacagctagattctgtatt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttacaatatactgaaacagttgaggttcatgtggttgaattaacagctagattctgaatt 500

                                                                       
Query: 301 atagaggccacccttatattgtctggtttggcgtaatagccagatggataggcttttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagaggccacccttatattgtctggtttggcgtaatagccagatggataggcttttcta 560

                                                                      
Query: 361 agtaattgttcctttctaagtaagtcatcatgttacttcttgttcattgggatccctat 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaattgttcctttctaagtaagtcatcatgttacttcttgttcattgggatccctat 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)