BAC Information

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BAC

Clone NameMSMg01-236K21
Chromosome14 (Build37)
Map Location 122,632,491 - 122,632,782
singlet/doubletsinglet
Overlap geneClybl, 1700108J01Rik
Upstream geneFarp1, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710
Downstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236K21.T7 (MSMg01no236_k21.b1)MSMg01-236K21.TJ (MSMg01no236_k21.g1)
ACCAG401865AG401866
length748821
length of high quality
(start - end)
291 (64 - 354)41 (75 - 115)
definitionCHROMAT_FILE: MSMg01no236_k21.b1 PHD_FILE: MSMg01no236_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:18 2005CHROMAT_FILE: MSMg01no236_k21.g1 PHD_FILE: MSMg01no236_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGCGCC
ACCCTGCCCAGAGAGCCCAGATGGCGCTTAAATCTGTCACTCTTTAACGA
CCCTACTGTTTTTTACCATATTTTTATATTGAGCTCATTCAGTTTAATCT
GAGAGATTAATCATTTCCAAGATCTGTCCGGGGAGGGCTGGCTGAGGGCT
TTCTCTTGCCAGAACGGAAGCAGGAAGGATGGCAGAGGACAGGACCTACC
TGCTAGCCGAGTCCTGGACTGGAGGCCCCTGTGGGCTTTGGGACATTCAC
AGACAGCAGGGTTGAGTTGCCCACCCGGGGCGTAGTAGCAGTGGGGCTGA
GGGATATTGGAACGGCACCCCCGCCCAAAGGCCTGGGGGGTGGAGGTGAA
TACTGACGCATCCAGAAAAGCCGATGCTGTTGCCAACCTCCGCGTTCTGC
AAGGGGTCTGGAACTGGCTGGGTGATGCCGGGATGGCCCTCACTACAAAG
GGTTGACCCGGTGGGTGTACCACCTGGAGCATACCCCCCGGTGGAAGAAC
CTCTCCAAGATGGTTCTAGAAACAATCCGCTTTACACTGGGACTCTCGCC
AATCTTATAGGTCTTCCTCCCAAGGGCTCCCATCCTCCTTTCTTCTTATA
TTTTGGGACAGTGATTTGTGCTGTGAGACGCTGGCTAGCCTCTCCTTCCA
TGTTCCTAACCTCCCATATGTTTGCAGAGTGGCTTGCAATTGCTGTCN
CGATGAAGTGCTAGGCCTGGCGGAGCCTGGGTTTCTCATTTGANTGAACT
ATAGAAGGACTGACAAAATCTATCAAATTGTCTAAGCTGTCTAGTGCTTG
TTTGCAGGAGGGATTTTTGGCCGGGAGGGGGGGGNNNNNNNNNNNNNNNN
NNTAANNNNANNNAAAAAAAAAANAAAGAAAAAAAAGAATAATAAAATTT
TTAAAATTTTATTATTTATTTTTGTTTTTATTTATATTTTTAAATGGTTT
TTTTTTTTTTTTTAAATATATATTTTATTTAAATATTTTATAAAAGAAAA
ATAAAAAAAATTTTGGTGATTTTAAAAAAAAAAGAGAAAGAGAAAAAAAT
TTTTTTTTTTTTTCCCCCCCCCACAAAAAAAAAGAAAAAAACGGAGGTGA
AAGGGGAGCACAAAAAAAAAAAAAAAAAAAAAATTTTTTGTGTTTGTTTT
ATATATAAATATTTAAATAACTTTAATAAATTAAAAGAAATTTGAAATTT
AAATTAAAATTTTTAAATTTTAATTTATATTTTTAAATGTATATATATTA
AAAAATATTTTATATATATAAATTTTTATTTTTTAAATATATTATTTTTT
TATAAATTAAAATATTATAATTTTATTCTAATATTATTAATTTTGTATTT
TATTTTTTATTATTATTTATATAGACATTTAAATAATATATTGTATTTAT
AATAATTAAATTTTTTTTTTTTTTTTTAAATATTTTTATTAAATTTTTTA
ACTTCTTTTTTAATTTTCACATTAAAAATATATATATTTATTTTATACCT
CCCTTAAAATATTTATAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_k21.b1 MSMg01no236_k21.b1 CHROMAT_FILE:
MSMg01no236_k21.b1 PHD_FILE: MSMg01no236_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:18 2005
         (291 letters)



>mm_chr14_122632291_122632982
          Length = 692

 Score =  518 bits (268), Expect = e-151
 Identities = 286/294 (97%), Gaps = 5/294 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccagatggcgcttaaatctgtcactctttaacgaccctactgttttttacca---ta 57
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  |   ||
Sbjct: 201 agcccagatggcgcttaaatctgtcactctttaacgaccctactgtttttta--aaaata 258

                                                                       
Query: 58  tttttatattgagctcattcagtttaatctgagagattaatcatttccaagatctgtccg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttttatattgagctcattcagtttaatctgagagattaatcatttccaagatctgtccg 318

                                                                       
Query: 118 gggagggctggctgagggctttctcttgccagaacggaagcaggaaggatggcagaggac 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gggagggctggctgagggctttctcttgccagaacggaagcaggaaggatggcagaggac 378

                                                                       
Query: 178 aggacctacctgctagccgagtcctggactggaggcccctgtgggctttgggacattcac 237
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agggcctacctgctagccgagtcctggactggaggcccctgtgggctttgggacattcac 438

                                                                 
Query: 238 agacagcagggttgagttgcccacccggggcgtagtagcagtggggctgaggga 291
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 439 agacagcagggttgagaagcccacccggggcgtagtagcagtggggctgaggga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)