BAC Information

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BAC

Clone NameMSMg01-236N06
Chromosome14 (Build37)
Map Location 106,112,508 - 106,112,831
singlet/doubletsinglet
Overlap genenone
Upstream geneD130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376
Downstream geneLOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236N06.T7 (MSMg01no236_n06.b1)MSMg01-236N06.TJ (MSMg01no236_n06.g1)
ACCAG401966AG401967
length719748
length of high quality
(start - end)
324 (45 - 368)247 (128 - 374)
definitionCHROMAT_FILE: MSMg01no236_n06.b1 PHD_FILE: MSMg01no236_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:29 2005CHROMAT_FILE: MSMg01no236_n06.g1 PHD_FILE: MSMg01no236_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAGGATGTTACTTAGGAGCTAAGGGATTCTCTATAATCTTTCACA
ATTAGGATTTCTCTGTGTCACTCCCCAGGTGCTTTCACCAACTATTGTGT
AGAGAGTGATGGAATGTTTGAAATAGCCAACTTGTCCACCAATTTGTTTT
ATAGATGAAAAAGAAATAAGACACATAGAGATGTATAATTCAACAACAAA
GACTAAAGGCAAAAACTTTTAACTTAATCTAGTTTAAATTTCCTTAGGAG
GAAAGTCAGTTTTGTTAGATGGTATTTTCCAGCAGTGCCTGATTAAGTAT
TTTTGGTTTTGATTTTTAAATACCCCCGCGCTCTTAGGTCAATGTGAACA
CCTCTGTATCACTATTCTCTATTTCAAGCATGAAGAATTCTTTAAAAAGC
CCTCCACCCTCCCCACCTCTCTGAATCATTTATTATCTGACCAATGAGAC
TTAGGCTACATGAATCTAACAAACCATAACTGGTCTTGTCTCCACCCTTC
CCTGAATCTGGCTCCAATGATCCCAAGTCTATTACAAATGCAGAAAGTTT
TGTGGCTACTAAGGTTCTTATATTTCCCTAATTTTGTGCTCTTTTTTACA
AAGATGGAGGGCCGAGTTCTGACCTGCTGTCCCTTTACTTTATGACTCAT
GCACTATGCTTGATTTGTG
CCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGACAGAAGAGCGAGATAAGGG
CAGACCATCTCAACAATTTCCCTTTCCCCTGGCTTTTCCAGTTTAATACA
GAATTGCAAACACCCTTATTTTAGCATATTTAAATGCCTTTCTATTTCTA
AAGCTATGAATTACTTCCAATCCTCATTGGAAAGAATACAGAACAATTCA
GAATATTGCTGAATGAAACCCAACTTGGTACAACTACTTTAGAAAGCAGT
TTGACATTGTCTACTTAGTCAAGACGGTCTCTTTTCCCCCTTAGAGCTAC
CTTCTCAGTTACTTTTTTTTTTACCGCCCCCTACCTTACTTTGGATATTT
CTGCTTTCCTAATAAAAATCTTTTTTCCTTAATTATTCTTTCAATGGGTA
TATCAATAGAAAGAGATACCTATAGATAAATAGGTGGCAGGTAGGCAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGACAGCTATATTACCCT
TTTTTTAATAATACCTTTTACACTCACCCCCCCTTCTTTTTTTATTTTAT
TTTGGCACCTCTTCCTCTACTCCCAAATCATGAATTGCATCACCATTTGC
TTTTCCCCCCCCACACCCCAACCCACCCTTTTTTTCGAAGTTTTATTTCG
CATTTATCACCCCACTATTTTTTTTTGTATTACTCACCTCCTCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_n06.b1 MSMg01no236_n06.b1 CHROMAT_FILE:
MSMg01no236_n06.b1 PHD_FILE: MSMg01no236_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:29 2005
         (324 letters)



>mm_chr14_106112305_106113031
          Length = 727

 Score =  572 bits (296), Expect = e-168
 Identities = 316/324 (97%), Gaps = 3/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccaggatgttacttaggagctaagggattctctataatctttcacaatt---a 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 527 ggaattcccaggatggtacttaggagctaagggattctctataatctttcacaattagaa 468

                                                                       
Query: 61  ggatttctctgtgtcactccccaggtgctttcaccaactattgtgtagagagtgatggaa 120
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggatttctctgtgtcactagccaggtgctttcaccaactattgtgtagagagtgatggaa 408

                                                                       
Query: 121 tgtttgaaatagccaacttgtccaccaatttgttttatagatgaaaaagaaataagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgtttgaaatagccaacttgtccaccaatttgttttatagatgaaaaagaaataagacac 348

                                                                       
Query: 181 atagagatgtataattcaacaacaaagactaaaggcaaaaacttttaacttaatctagtt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 347 atagagatgtataattcaacaacaaagactaaaggcaaaagcttttaacttaatctagtt 288

                                                                       
Query: 241 taaatttccttaggaggaaagtcagttttgttagatggtattttccagcagtgcctgatt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 287 taaatttccttaggaggaaagtcagttttgttagatggcattttccagcagtgcctgatt 228

                                   
Query: 301 aagtatttttggttttgattttta 324
           ||||||||||||||||||||||||
Sbjct: 227 aagtatttttggttttgattttta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 727
Length adjustment: 9
Effective length of query: 315
Effective length of database: 718
Effective search space:   226170
Effective search space used:   226170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)