BAC Information

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BAC

Clone NameMSMg01-237H12
Chromosome14 (Build37)
Map Location 27,596,435 - 27,596,746
singlet/doubletsinglet
Overlap geneDnahc7c
Upstream geneAnxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik
Downstream geneAsb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237H12.T7 (MSMg01no237_h12.b1)MSMg01-237H12.TJ (MSMg01no237_h12.g1)
ACCAG402407AG402408
length775780
length of high quality
(start - end)
295 (123 - 417)317 (96 - 412)
definitionCHROMAT_FILE: MSMg01no237_h12.b1 PHD_FILE: MSMg01no237_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:18 2005CHROMAT_FILE: MSMg01no237_h12.g1 PHD_FILE: MSMg01no237_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTCCCTCCTTTTTCTTTTTCTCCTTGTCCTCCAATATCTCNCCTCCT
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCCTAGAGACCTTGGGCCTGAACTCCA
TAGCCAGTCCCACAACACCCCGAGGGAGCTCCACTCACAGGTGCTCTAAC
ACTCCCAGGATCATAGAATCAGAGGTGAGGAGGACACAATATCTGCCCTA
ACACCGGAAGGAACTGGGACCAGCTGGACCGGGCACCCAGGAACTCTGCC
CAACCAGTGGCATGGGTTCCTTCTGGTCTGGCAGGTGCCCTTAGTAGACC
TTGGGCACGAACTCTGAAGCCAGTCCCACAACACCCAGAGGAAGATCCAT
TCCCAGGTGTTCTAATACCCCACGCCCACAGGATCCCAGGATCCCAGAAT
CACAGGATCACAGAGACAGCTTGACTCTGAGGAGTTCTGACACAACCAGG
ATCACAGGAAGGACAGACCCCAGTCAGATATAGCGAGGGCAGGTAGCACT
AGAGATAATCAGATGGTGGGAAGCACGCATAAGAACATATACAACAGAAA
CCAAGGTTACTTGGCATCATCAGAACTCAATTCTCCACTATAACAAGTCC
TGGATACACCATCACACCAGAAAAGCAGATTCCAATCTAAAATCTAAAAT
CACTTCTCATGATGACGATAGAGGAATTTATGAGAGACAGACATAATTCC
TTTTAAGAAAAACAGGACAACCCGG
TCTTTTTTTTTTTCCNTNTCCCCCCTTTCCTTATAAATTTTTTNNNNATT
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTAATTAGCACTCAAATGTATGTTTAAGCACCTTATCACTGTT
GGTCACATTTTTCACTCAGTACCATTGATCGCACTGAGAAAGAAAAGTAA
ACAGACAGGTGTTGATGATTCAGAAAGGAGGAGTTAATGAGCAGAATGAA
ATGTAAGGATTTAAACTCACACAGAAGGCTGCTCTCACATCAATGACAGG
AGTGTCACCCGATACACAGAGTTGGTGGTGACAAAATACAGTCCTGCTGA
CTTGTGTTTATGAAGGGATGATCCTCAGTTCTTTTCAGAAGAAATGAATG
CATTTTAATTATCTCATAGTGCCACCCCCCCACCCAGATCTGCTTAGCAG
TGTTCTCAACCCATGACCTCTGGGGTCACTTATGAGAGATCCTGCATATC
AGAAATTTACATTACATAGCAAAATGATAGTCATGAAGTAAACAACAAAA
TAATTTTATGGTTGGGGTCACCTCAACATGAGGAACTATGTTAAAGGAGC
ACAGCATACGAAGGTTGAGAGCCACGGGCTTCCAGAAACATAAAAGTGTA
TGTGGTTAGTACTGAGGACTGGATTAATTTAAAAGGCTGCCTTTGTGAAA
TATTCTCTAAAGATAATGGTGTGCCAATAGCATAAGCACCGTATACAAAG
CAAATCTTACCTACTAAAGGAAGCGAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_h12.g1 MSMg01no237_h12.g1 CHROMAT_FILE:
MSMg01no237_h12.g1 PHD_FILE: MSMg01no237_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:18 2005
         (317 letters)



>mm_chr14_27596231_27596947
          Length = 717

 Score =  549 bits (284), Expect = e-161
 Identities = 305/312 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaattagcactcaaatgtatgtttaagcaccttatcactgttggtcacatt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaattagtactcaaatgtatgtttaagcaccttatcactgttggtcacatt 264

                                                                       
Query: 65  tttcactcagtaccattgatcgcactgagaaagaaaagtaaacagacaggtgttgatgat 124
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcactcagtagtattgatcgcactgagaaagaaaagtaaacagacaggtgttgatgat 324

                                                                       
Query: 125 tcagaaaggaggagttaatgagcagaatgaaatgtaaggatttaaactcacacagaaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagaaaggaggagttaatgagcagaatgaaatgtaaggatttaaactcacacagaaggc 384

                                                                       
Query: 185 tgctctcacatcaatgacaggagtgtcacccgatacacagagttggtggtgacaaaatac 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 tgctctcacatcaatgacaggagtgtcacctgatacacagagttggtggtgacaaaatac 444

                                                                       
Query: 245 agtcctgctgacttgtgtttatgaagggatgatcctcagttcttttcagaagaaatgaat 304
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| 
Sbjct: 445 agtcctgctgacttgtgtttatgaaggggtgagcctcagttcttttcagaagaaatgaaa 504

                       
Query: 305 gcattttaatta 316
           ||||||||||||
Sbjct: 505 gcattttaatta 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)