BAC Information

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BAC

Clone NameMSMg01-237I16
Chromosome14 (Build37)
Map Location 83,715,130 - 83,715,485
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237I16.T7 (MSMg01no237_i16.b1)MSMg01-237I16.TJ (MSMg01no237_i16.g1)
ACCAG402461AG402462
length735748
length of high quality
(start - end)
313 (36 - 348)356 (383 - 738)
definitionCHROMAT_FILE: MSMg01no237_i16.b1 PHD_FILE: MSMg01no237_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:23 2005CHROMAT_FILE: MSMg01no237_i16.g1 PHD_FILE: MSMg01no237_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACT
TGAGGAGTACGGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCT
TAATCATCAGGCCAATGCAAATCAAAACAACCCTGATATTGCATCTCACA
CCAGTTAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAAATGCTGGCA
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGGAAATTGGAC
ATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCTTA
TTATGTCCCCCCCCCCCCCAAGGACACATGCTCCACTATGTTCATAGCAG
TCTTATTTACAATAACCAGAAGCTGGAAAAAAACCCAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATTTACATAAAGGAGTATTATT
CAGCCATTAAAAAGTATGAATTCATGAAATTCCTAGGCAAATGGATGGAC
CTGGAGGACGTCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACA
CAATATGTACTCACTGATAAGTGGATATTAGCCCAGAATCTTGGGATACC
CCAGATATAAGATACAATTTGATAAACGCATGACACTCAAGAAGAACGAA
GAGAAAAGTGTGGACACTTTGCCCCTTCTTAGAAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCATAATAACTTATTCTCATTTT
CAATTTTGAACTGAAGCATATTCCATGGTTTAGATTCAAACACAGGTTAT
ATTAAGTAATTATAACGCCATATATTTTCTAAAACCTTATAAACAGTAGA
GTTCATGACATTTCTATGATGAAATTTCTTTAATGGTAATTGTAGGAGAG
CTTTAAGATGACAATTGGTTGTTTAATTTATAACTGAATAGATTTTACTT
GAGAGCCTATAATAAGAAATTTTATACTTATATGATTCATTAAATGAGAA
TGATTTTAATGTTTATGATCCCTCCCCCCTCGTATATTAGGCAAAGTCAG
AACATATAGTTCCTTTAGAGTCACTGAATTCTGAAGTTTACAACTTGGAG
AGTAATATGGATACAGTGAAGACAGAAGTTACTGAAGAAGCTCAGCTACA
AAAATGAAACTGACAGTTAATAAAATTAAGAAGAAGATCAATTTGCTTTG
ATTATATTTTACTTATGCCTACAAATTTCAATTTATTAGGGAAAATAAAA
ATCATCCTTCGAGTTAGTTTTACAATATGGGATGATTTTCTGTGTAAAAT
AGTTGTTTTAAATTTCAATGTCTTATTAACTGGAGTCTGAGATCTACACA
AGTGATCTTGACTTGTATGTAGAGGACAGTTTGATATGCCTGAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_i16.g1 MSMg01no237_i16.g1 CHROMAT_FILE:
MSMg01no237_i16.g1 PHD_FILE: MSMg01no237_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:24 2005
         (356 letters)



>mm_chr14_83714930_83715685
          Length = 756

 Score =  658 bits (340), Expect = 0.0
 Identities = 352/356 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatattaggcaaagtcagaacatatagttcctttagagtcactgaattctgaagtttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatattaggcaaagtcagaacatatagttcctttagagtcactgaattctgaagtttaca 260

                                                                       
Query: 61  acttggagagtaatatggatacagtgaagacagaagttactgaagaagctcagctacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttggagagtaatatggatacagtgaagacagaagttactgaagaagctcagctacaaa 320

                                                                       
Query: 121 aatgaaactgacagttaataaaattaagaagaagatcaatttgctttgattatattttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaaactgacagttaataaaattaagaagaagatcaatttgctttgattatattttac 380

                                                                       
Query: 181 ttatgcctacaaatttcaatttattagggaaaataaaaatcatccttcgagttagtttta 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgcctataaatttcaatttattagggaaaataaaaatcatccttcgagttagtttta 440

                                                                       
Query: 241 caatatgggatgattttctgtgtaaaatagttgttttaaatttcaatgtcttattaactg 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatatgggatgattttctgtataaaatagttgttttaaatttcaatgtcttattaactg 500

                                                                   
Query: 301 gagtctgagatctacacaagtgatcttgacttgtatgtagaggacagtttgatatg 356
           | |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gtgtctgagatctacacaagtgatcttgacttgtatgtagaggaaagtttgatatg 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)