BAC Information

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BAC

Clone NameMSMg01-260P02
Chromosome14 (Build37)
Map Location 120,233,963 - 120,234,362
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, LOC619601, EG621324, LOC100043830
Downstream geneOxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260P02.T7 (MSMg01no260_p02.b1)MSMg01-260P02.TJ (MSMg01no260_p02.g1)
ACCAG403469AG403470
length766765
length of high quality
(start - end)
390 (70 - 459)404 (80 - 483)
definitionCHROMAT_FILE: MSMg01no260_p02.b1 PHD_FILE: MSMg01no260_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:12 2005CHROMAT_FILE: MSMg01no260_p02.g1 PHD_FILE: MSMg01no260_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CTTTGTTTATCTCTGTACCAATTTTTTAATGGGGTTATTTGAATTTCTGG
AGTCCAGCTTGTTGAGCTCTTTGTATATATTGGATATTAGTCCCCTATTA
GATTTAGGATTGCTAAAAGTTCTTTCCCAATCTGTTGGTGCCCTTTTTGT
CTCATTGACAGTGTCTTTTGCCTTACAAAAGCTTTGCAATTTTATGAGGT
CCCATTTGTCAATTCTTGATCTTACAGCACAAGTCATTGTTGTTCTGTTT
AGAAAATTTTCCCCTGTGCCCATATCTTCTCAACTTTTCCCCACTTACTC
CTCTATAAATTTCAGTGTCTCTGGNTTTATCTGAAGTTCTTTGATCCACT
TAAGCTTGAGCTTTGCACAAGACTTCTAAGGAGGGAAGTCCATTTGACTA
TATCAATATTTGTAGAAATAGCCTCCAGAAGGAACAATGTGGTAAGAATT
TAAGAAACTTAACTAATCACCTTATGAAATGATAGGAAAACTATTTCAAA
AGCTCATAGAGGAGGACTATGACAGGCTTGGCATATGAGCCACAGGGGCA
TTCAAGCATCACCCGGATCTTGCTTGACTCTACCGGTTTCTCACCTTCTC
AGTGTTCCCCTCAACATCCTTTTTTATAGCTTGCCCATATATCCCACCTT
CCATCTGTGGGGTGTATTCTTAAAGCTGATAAAGAACGTAATTGGTCTTA
ATTTCCTTGCCCCTCA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTGAGACTACTGTCTTAT
CACTCAATTACATCACATCTTAGCCAGTCAGCATGGACACTGTATGCATC
TGTTTGTTTAGTGGCGCCTCCACATTTCGTGGTGCATCTGCATGGCAGAG
TCTGAACTGTTGTCTGTTTTTATAAGTCCAGTGCCCGGTGATCCCGAGAA
CTGCTGCCTTATTTTCATATTCTTCAAAAGAAATGACAGTGTGGTTCATC
TAAAAAAATGTCTTCTGCGTCTGAAGACCTGCTGAGATCTGTTTATCATT
GTCCTGTGAGAAGGAAAAAATACGAGCAGGTCTGAAGCCTTCATAGGTAA
AGTTTCTATCTCCTTCATATAAGGGGTAGCAACAAATCAAGATGTCATTC
TCGGTGATTGACTTAGATAAAGTAAAGGCTAGATGAATTAGGTGTGTTGG
CTGCTGGTTCAAGTGGATCTCAAAGGCTATAAACGGGAGGGAGGAGCTGC
TGGTAATATCAAGGATAAACCCAAGCCATATTTGCCTTTATGTTGCTTTT
TTTTTCCTTCCAAAAAATCCCCAAGTCTACAGATGTGCCAAAAAATAAAC
CACAACTGGACATACAGTGGTCTTCCAGGGAGCGAAGGCTACTCTGCCTC
ACTGCCGCCGAATAAGCAGCCCCTTCCAGATATCAGCTTTTGTCCCTTTG
GGCGAAAATTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_p02.g1 MSMg01no260_p02.g1 CHROMAT_FILE:
MSMg01no260_p02.g1 PHD_FILE: MSMg01no260_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:12 2005
         (404 letters)



>mm_chr14_120233759_120234562
          Length = 804

 Score =  750 bits (388), Expect = 0.0
 Identities = 397/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgagactactgtcttatcactcaattacatcacatcttagccagtcagcatggacactgt 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgaggctactgtcttatcactcaattacatcacatcttagccagtcagcatggacactgt 545

                                                                       
Query: 65  atgcatctgtttgtttagtggcgcctccacatttcgtggtgcatctgcatggcagagtct 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 544 atgcatctgtttgtttagtggcgcctccacatttcatggtgcatctgcatggcagagtct 485

                                                                       
Query: 125 gaactgttgtctgtttttataagtccagtgcccggtgatcccgagaactgctgccttatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 484 gaactgttgtctgtttttataagtccagtgcccggtgatcccgagaactgccgccttatt 425

                                                                       
Query: 185 ttcatattcttcaaaagaaatgacagtgtggttcatctaaaaaaatgtcttctgcgtctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttcatattcttcaaaagaaatgacagtgtggttcatctaaaaaaatgtcttctgcgtctg 365

                                                                       
Query: 245 aagacctgctgagatctgtttatcattgtcctgtgagaaggaaaaaatacgagcaggtct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aagacctgctgagatctgtttatcattgtcctgtgagaaggaaaaaatacgagcaggtct 305

                                                                       
Query: 305 gaagccttcataggtaaagtttctatctccttcatataaggggtagcaacaaatcaagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaagccttcataggtaaagtttctatctccttcatataaggggtagcaacaaatcaagat 245

                                                   
Query: 365 gtcattctcggtgattgacttagataaagtaaaggctaga 404
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtcattctcggtgattgacttagataaagtaaaggctaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)