BAC Information

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BAC

Clone NameMSMg01-260P10
Chromosome14 (Build37)
Map Location 39,368,227 - 39,368,917
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC382871, LOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260P10.T7 (MSMg01no260_p10.b1)MSMg01-260P10.TJ (MSMg01no260_p10.g1)
ACCAG403484AG403485
length757763
length of high quality
(start - end)
598 (42 - 639)691 (73 - 763)
definitionCHROMAT_FILE: MSMg01no260_p10.b1 PHD_FILE: MSMg01no260_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:14 2005CHROMAT_FILE: MSMg01no260_p10.g1 PHD_FILE: MSMg01no260_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCTTCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGCTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCCCACCACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACAGGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAACTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
ACTAAAGCTTTACGTCTGGCATGTTGATTCCGCCAGAAGTTCTTTTACTC
TTGATAAGACCTTTTGCTATCCTAGGTCTTTTGTTATCCCCCACCACTTT
CGTTTTG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGTGCGTGATAACATCATGGAGTGTA
CAAATATACAGAGTGATGAGCAGAGGCAGATTAACACACAGCACAAATAA
TCTTCTGGGTATGAATTTTAACAATCAAGATGTTATTTATAATAACAAAA
TGATAATTAAGAGTAAAAATTCCAATAACTCATATGATATTTTAGCTTCC
CATGGATGTTTTCTTAGCCTATGTCAAAAATGCATATTTTTCATGATTTG
GAGACTTACTTTTTAAGCTGATACTTAACCTCATTTTAAGTCCAAAAGCA
TGAGAGTTTCAGACTACTGGGGTCCAGAGGCCTATAATTACAAATGAAGG
GAAACCATAGTTGACGGCTAATTGTAGGCAATATAATAATTGCTACCTAG
TAAATATTTGGCACTCACGGTTTGAGAGACACAAGACAAAATGATTGGAG
AAACAGTGTTACTGAGGACTGTCATCTAAATTAGGCAGCAGAACTTGGTA
AAGGTAAATAAATTGATTAAACATTTGGCTAAACTGAGGTCATAAAGAGG
GTCCTCATTCTTTTTTCTCCTTTCTTCTTTTCCTAGAAAAGACAAAGCAA
AAGCAGAGAAATAAGCATAGGAAATGAACTGTGAGAATAGGAACTTTTTG
CATGCCTGCTCCTCCCTTGACATCAGGGCATTGGCCCATCCTTCACTACT
GCCCCTATGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_p10.g1 MSMg01no260_p10.g1 CHROMAT_FILE:
MSMg01no260_p10.g1 PHD_FILE: MSMg01no260_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:14 2005
         (691 letters)



>mm_chr14_39368027_39369117
          Length = 1091

 Score = 1305 bits (675), Expect = 0.0
 Identities = 687/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgcgtgataacatcatggagtgtacaaatatacagagtgatgagcagaggcagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tgtgtgcgtgataacatcatggagtgtacaaatatacagagtgatgagcagaggcagatt 832

                                                                       
Query: 61  aacacacagcacaaataatcttctgggtatgaattttaacaatcaagatgttatttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 aacacacagcacaaataatcttctgggtatgaattttaacaatcaagatgttatttataa 772

                                                                       
Query: 121 taacaaaatgataattaagagtaaaaattccaataactcatatgatattttagcttccca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 771 taacaaaatgataattaagagtaaaaattccaataactcatacgatattttagcttccca 712

                                                                       
Query: 181 tggatgttttcttagcctatgtcaaaaatgcatatttttcatgatttggagacttacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tggatgttttcttagcctatgtcaaaaatgcatatttttcatgatttggagacttacttt 652

                                                                       
Query: 241 ttaagctgatacttaacctcattttaagtccaaaagcatgagagtttcagactactgggg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttaagctgatgcttaacctcattttaagtccaaaagcatgagagtttcagactactgggg 592

                                                                       
Query: 301 tccagaggcctataattacaaatgaagggaaaccatagttgacggctaattgtaggcaat 360
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 591 tccagagacctataattacaaatgaagggaaaccatagttgatggctaattgtaggcaat 532

                                                                       
Query: 361 ataataattgctacctagtaaatatttggcactcacggtttgagagacacaagacaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ataataattgctacctagtaaatatttggcactcacggtttgagagacacaagacaaaat 472

                                                                       
Query: 421 gattggagaaacagtgttactgaggactgtcatctaaattaggcagcagaacttggtaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gattggagaaacagtgttactgaggactgtcatctaaattaggcagcagaacttggtaaa 412

                                                                       
Query: 481 ggtaaataaattgattaaacatttggctaaactgaggtcataaagagggtcctcattctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggtaaataaattgattaaacatttggctaaactgaggtcataaagagggtcctcattctt 352

                                                                       
Query: 541 ttttctcctttcttcttttcctagaaaagacaaagcaaaagcagagaaataagcatagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttttctcctttcttcttttcctagaaaagacaaagcaaaagcagagaaataagcatagga 292

                                                                       
Query: 601 aatgaactgtgagaataggaactttttgcatgcctgctcctcccttgacatcagggcatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aatgaactgtgagaataggaactttttgcatgcctgctcctcccttgacatcagggcatt 232

                                          
Query: 661 ggcccatccttcactactgcccctatgatcc 691
           |||||||||||||||||||||||||||||||
Sbjct: 231 ggcccatccttcactactgcccctatgatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)