BAC Information

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BAC

Clone NameMSMg01-261I13
Chromosome14 (Build37)
Map Location 72,395,021 - 72,395,545
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043132, LOC100043136, LOC668477
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261I13.T7 (MSMg01no261_i13.b1)MSMg01-261I13.TJ (MSMg01no261_i13.g1)
ACCAG403893AG403894
length761706
length of high quality
(start - end)
719 (43 - 761)525 (80 - 604)
definitionCHROMAT_FILE: MSMg01no261_i13.b1 PHD_FILE: MSMg01no261_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:57 2005CHROMAT_FILE: MSMg01no261_i13.g1 PHD_FILE: MSMg01no261_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCCATACCCAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGTCCACTTTCTCCCTACCTCTTCAACATAGTACT
TGAAGTCTTAGCCAGAGCCATTCAACAACAAAAGGAGATCAATGGGATAC
AAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGACCCTAAAAATTCTATTAGAGAACCCCTAAACCTGAT
AAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAA
TGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAAAAATATAAAATACCTTGTCGTGAC
TCTAACTGAGGAAGTACAATATCTGCATGATAAAAACTTCAAGTCTCTGA
AGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCA
TGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAAT
CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG
AATTAGAAAGGGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGG
ATAGCAAAAAC
NNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACTGAAATAAAACATGGA
TCTCTACTCCCCCTACAGTTAATAACACCGGGACCTCAAATTCAAAGCCA
CCCTTCTATCTCCCTGAGCCACTGTCCTTGATCATCATCAATATCGATTT
CTGAATAACTCATAATAATTGAGAACAAGGGCAAACAATTCTTCTGGTTT
AACAGAGAAACGGTTTATCAAAAAGTAGCTATGGGTTGCTTCCAAGATCT
CTATATGCAGTCCAGAGAAGTGACTTCAAATTACATTCACCTCACTGGTG
CTTGTGATAACTATGGTGCAATCCCCTTGCTCCTATCCCTGAGCACTAGA
TGCTGCAAGTTGCTCCGTACTTTCCTCAGAAACTAAACACAGGTCTCAAA
TGCCATTTTTGCTTGTGGGGGCATGGAGAAGCTATTGCAGCTCCCTCGGT
TATCACTCTTCCCTACCGAACAAAGGCCTCAGAGTTTCTCTCTCTGCAGC
CAATTCTGTGATTAGTGCATCTGGTCAGTGGTAGAGAGACATGAATCTCT
ACTGTACGTGGTAGACTCAGATGGTGATTATAGAATGCGTTTTTTAATAT
GTGCTACGCCAAAACCATTATGCTATTGGACCCATTTTCTGTATTGCAAG
CTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_i13.g1 MSMg01no261_i13.g1 CHROMAT_FILE:
MSMg01no261_i13.g1 PHD_FILE: MSMg01no261_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:57 2005
         (525 letters)



>mm_chr14_72394821_72395745
          Length = 925

 Score =  977 bits (505), Expect = 0.0
 Identities = 520/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacactgaaataaaacatggatctctactccccctacagttaataacaccgggacctcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cacactgaaataaaacatggatctctactccccctacagttaataacaccaggacctcaa 260

                                                                       
Query: 61  attcaaagccacccttctatctccctgagccactgtccttgatcatcatcaatatcgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaaagccacccttctatctccctgagccactgtccttgatcatcatcaatatcgatt 320

                                                                       
Query: 121 tctgaataactcataataattgagaacaagggcaaacaattcttctggtttaacagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaataactcataataattgagaacaagggcaaacaattcttctggtttaacagagaa 380

                                                                       
Query: 181 acggtttatcaaaaagtagctatgggttgcttccaagatctctatatgcagtccagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggtttatcaaaaagtagctatgggttgcttccaagatctctatatgcagtccagagaa 440

                                                                       
Query: 241 gtgacttcaaattacattcacctcactggtgcttgtgataactatggtgcaatccccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gtgacttcaaattacattcacctcactggtgcttgtgataactatggtgcaatacccttg 500

                                                                       
Query: 301 ctcctatccctgagcactagatgctgcaagttgctccgtactttcctcagaaactaaaca 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ctcctatccctgagcactagatgctgcaagttgccccgtactttcctcagaaactaaaca 560

                                                                       
Query: 361 caggtctcaaatgccatttttgcttgtgggggcatggagaagctattgcagctccctcgg 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggtcccaaatgccatttttgcttgtgggggcatggagaagctattgcagctccctcgg 620

                                                                       
Query: 421 ttatcactcttccctaccgaacaaaggcctcagagtttctctctctgcagccaattctgt 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcactcttccctaccgaacaaaggtctcagagtttctctctctgcagccaattctgt 680

                                                        
Query: 481 gattagtgcatctggtcagtggtagagagacatgaatctctactg 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattagtgcatctggtcagtggtagagagacatgaatctctactg 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)